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This project is mirrored from https://github.com/NOAA-GFDL/MOM6-examples.git.
Pull mirroring updated .
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dev/gfdl/2019.08.086d6e02b3 · ·
dev/gfdl/2019.08.08 6d6e02b Replaced local mask_tables with links ecc553c Added JRA55-do version of OM4 d26b3ae Adds file-based rho2 diagnostic to OM4 b7a1dd5 MOM6: Merge pull request #969 from marshallward/dia_diff_saln_fix a6cfa03 *MOM6/SIS2: Merge branch 'marshallward-hiprec' into dev/gfdl 98fb6a1 Merge branch 'raphaeldussin-bump_mkmf_version' into dev/gfdl 5b8bb33 Merge branch 'bump_mkmf_version' of https://github.com/raphaeldussin/MOM6-examples into raphaeldussin-bump_mkmf_version 81d659d Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6-examples into dev/gfdl 0a0fa94 bump mkmf version 2394c28 Merge pull request #281 from raphaeldussin/fix_htrans_units d8a9d8f MOM6: Merge pull request #960 from breichl/user/bgr/Init_from_Z_add_scale_offset bb7f05a MOM6: Merge branch 'raphaeldussin-fix_transport_units' into dev/gfdl 83938f6 fix units 63e6cb9 Roll forward FMS to f2e2c86f6c0 9738c67 MOM6: Merge branch 'Hallberg-NOAA-code_units_cleanup' into dev/gfdl 1123cdb MOM6: Merge pull request #952 from marshallward/tanh_opacity c17c2be Merge branch 'marshallward-frictworkmax_param' into dev/gfdl 9925bc0 MOM6: Merge pull request #950 from marshallward/frictworkmax_v3 a797af8 Remove FrictWorkMax from global_ALE params 711d8fa Merge branch 'dev/master' into dev/gfdl 84e8725 Merge branch 'dev-master-candidate-2019-07-08' into dev/master ae16855 Merge branch 'Hallberg-NOAA-parameterizations_cleanup' into dev/gfdl 5f57477 Updated submodule src/MOM6 0607744 MOM6: Cleaned up vertical parameterization code 3d11154 MOM6: Merge pull request #944 from Hallberg-NOAA/fix_line_lengths 912a1ad Merge pull request #275 from ElizabethYankovsky/newexperiment bb8049a MOM6: Merge pull request #943 from adcroft/static--mode-fixes-for-pr-935 0b01af1 Merge branch 'dev/master' into dev/gfdl 799219b MOM6: Merge branch 'gustavo-marques-dev-master-candidate-2019-06-11' into dev/master af2f756 MOM6: Merge pull request #942 from marshallward/meke_kh_diag fbeb6ae Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6-examples into dev/gfdl fa65bff Merge pull request #274 from StephenGriffies/OM4_diag_table_updates af07b94 Adding .nc files 0cb3b05 Changing gitignore f6b18b8 Adding the rotating gravity current experiment 38a2aed Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into dev/gfdl 141cb23 MOM6: Updated MOM6 to version of dev/GFDL with RGC_tracer code d4616fa min/max zos,tos; heat trans to annual 07126b5 min/max zos,tos; heat trans to annual; remove unused ndiff diagn 310bd73 Update MOM6 01ac90f Disabled coverage job 6e683dc MOM6: Merge branch 'breichl-user/bgr/OSBL_Updates' into dev/gfdl 90da109 Merge branch 'Hallberg-NOAA-Fix_intersperse_ice_test' into dev/gfdl 4d5cb05 Added needed empty CIOD_override file 1f5b03f Merge branch 'Fix_intersperse_ice_test' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-Fix_intersperse_ice_test a7f0436 Updated the version of MOM6 to NOAA-GFDL/MOM6@41cfb68 c73a0de Merge branch 'marshallward-z_diag_param_purge' into dev/gfdl 71abe1c Z diag param purge ff18d3c Merge branch 'marshallward-no_zdiag_params' into dev/gfdl a0c6c20 Z diag purge: parameter update 22f1cd9 Z diag purge 8a7f8e2 *Fixed input.nml for Intersperse_ice_1deg test case 3099ac3 Merge branch 'Hallberg-NOAA-remove_newlines' into dev/gfdl 2def9a4 MOM6: Merge branch 'Hallberg-NOAA-remove_newlines' into dev/gfdl f7f2c4e Added updated SIS2 parameter doc files 5db88e6 MOM6: +Removed hard newlines in get_param calls 65474a8 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into dev/gfdl fcff994 MOM6: Merged MFJansen-GMplusBS_final-alt code 6d30f17 Merge branch 'gustavo-marques-surface_flux_analysis_ocean_only_updates' into dev/gfdl 4e9082f Minor tidy up of jupyter notebook d491c69 Merge branch 'surface_flux_analysis_ocean_only_updates' of https://github.com/gustavo-marques/MOM6-examples into gustavo-marques-surface_flux_analysis_ocean_only_updates 69dcd9e Merge branch 'Hallberg-NOAA-set_vel_underflow' into dev/gfdl 4478a07 Merge branch 'set_vel_underflow' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-set_vel_underflow ed230a4 Merge branch 'Hallberg-NOAA-double_gyre_depth_list_params' into dev/gfdl c30cdc2 Merge branch 'double_gyre_depth_list_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-double_gyre_depth_list_params 9cc4181 Set VEL_UNDERFLOW = 1e-30 in 12 test cases a928df9 Changed double_gyre DEPTH_LIST parameter settings 8d39a14 Add necessary link to datasets for new expt 949cf34 Fix available_diags 6693b97 Slurm conversion: reduced node count for coverage 86b3ceb Switching from moab to slurm 1275c4e Merge branch 'Hallberg-NOAA-add_interspersed_ice' into dev/gfdl 3a9c367 Updated parameter doc files in Intersperse_ice_1deg f84e91f Merge branch 'add_interspersed_ice' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-add_interspersed_ice 54367eb Merge branch 'Hallberg-NOAA-diabatic_aux_cleanup' into dev/gfdl a61e347 MOM6: Merge branch 'Hallberg-NOAA-diabatic_aux_cleanup' into dev/gfdl 13d9e0c Added missed MOM_parameter_doc updates de7b070 Merge branch 'diabatic_aux_cleanup' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-diabatic_aux_cleanup aa70038 Merge branch 'dev/master' into dev/gfdl 485e5a8 Merge branch 'dev-master-candidate-2019-04-26' into dev/master cbae9fd Use xanadu-fms version of gitlab scripts 5e310e9 MOM6: Merge branch 'dev-master-candidate-2019-04-26' into dev/master 69550e4 MOM6: +Extended MIN_SALINITY and fixed subML_N2 5501702 MOM6: +(*)Added MIN_SALINITY and fixed subML_N2 9d9e35b MOM6: Merge branch 'marshallward-dev/gfdl' into dev/gfdl 1d13a81 MOM6: Merge pull request #915 from adcroft/xanadu-fms cf73a9a FMS switched to xanadu 2bc3645 Merge branch 'dev-master-candidate-2018-04-22' into dev/master 58fe79c MOM6: Merge branch 'dev-master-candidate-2018-04-22' into dev/master 2eac211 Candidate for dev/master 13f94b7 Update mkmf and specify version of test scripts ec17a4c Merge branch 'dev/master' into dev/gfdl 4162cfc MOM6: Merge pull request from EMC-MOM6/feature/nuopccapPR to dev/master d1a6f3c SIS2: Merge branch 'Hallberg-NOAA-remove_Verona_interfaces' into dev/gfdl 3951df3 MOM6: Merge pull request #869 from nikizadehgfdl/nikizadeh_diag_decimation 9439342 Temporary rollback from xanadu 8a3501a Add the new Intersperse_ice_1deg test case 6526357 FMS: Updated to xanadu 8859644 +(*)Updated coupler, SIS2 & MOM6 for interspersed ice 78c1690 Merge pull request #259 from jkrasting/user/jpk/dora-fixes a285524 Save forcing and surface every 12 hours 7584b48 Update MOM_parameter_doc.layout 63e8d43 Update MOM_parameter_doc.layout dc97bea Set IO_LAYOUT = 1, 1 42b93fb Update notebooks for layer and z - tendencies are now computed over 12 hours 18ca692 Merge branch 'dev/master' into dev/gfdl c1f5aa7 MOM6: Merge branch 'gustavo-marques-sync_dev_master_19Dec18' into dev/master 78de7eb Merge branch 'dev/gfdl' into user/jpk/dora-fixes 583cf79 Update logical tests on None type 128b95d Force integer type when slicing array c890333 Updates available_diags for global_ALE/layer c764ec7 Revert "Set days = 3" f82b7bf Merge pull request #255 from gustavo-marques/surface_flux_analysis_ocean_only 68df911 Mentioned that tendencies are over one day. fe3145c Update Surface flux analysis Notebook ad0d3b2 available_diags changes because diag_table was updated 2faf484 Set days = 3 14f0d20 Add fields and increase precision df55f6c Added random_numbers module to Travis-CI build b85fe5f MOM6: Merge branch 'hlkong-topoMEKE' into dev/gfdl e1069e2 Merge branch 'Hallberg-NOAA-document_user_params' into dev/gfdl 08871b5 Merge branch 'document_user_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-document_user_params c558371 Document user code parameters 43d933d Merge branch 'Hallberg-NOAA-use_unit_scaling_type' into dev/gfdl a3881e1 Use unit scaling type e6f3523 Merge branch 'dev/master' into dev/gfdl e0b2739 MOM6: Merge branch 'Hallberg-NOAA-test_depth_units' into dev/gfdl 1a42956 MOM6: Merge branch 'gustavo-marques-fix_wd_register' into dev/gfdl 9295738 Merge branch 'breichl-user/bgr/ideal_hurricane' into dev/gfdl 0bb46d5 Updated the version of MOM6 used by MOM6_examples 6467e88 Added updated MOM_parameter_doc files 871ef70 Reverting rename of 'CVmix_SCM_tests' to 'CVMix_SCM_tests'. 11296a5 Updates to input parameters inidealized_hurricane test case 8297256 Updated CVMix_SCM_tests skin_warming_wind case for interior dtdz=0 (as in dev/gfdl). - dtdz was updated in MOM_override to be 0 in dev/gfdl, this commit is fixed to reflect that using the new scm TS init routine. a022d67 Merge branch 'dev/gfdl' into user/bgr/ideal_hurricane bf8f9bb MOM6: Merge branch 'Hallberg-NOAA-test_depth_units' into dev/gfdl df8432a Modifications to run the idealized_hurricane (3d) test case. - MOM_input changed for a .1 day simulation for the test case. - MOM_parameter files added - .nc file added from .cdl file for vertical grid. - ideal_hurr TS class changed to CVMix TS class for a corresponding PR to MOM6. - This test-case also relies on a corresponding PR to MOM6 d1f5614 Merge branch 'IdealHurricane' into user/bgr/ideal_hurricane 158d51d Renamed CVmix_SCM_tests folder to CVMix_SCM_tests e500d54 Update to SCM_idealized_hurricane test case MOM_input file. f95ad83 Updating input files in CVMix test cases 7da7cf3 Merge branch 'dev/master' into dev/gfdl 585b9ce MOM6: Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master 48536b4 Merge branch 'MJHarrison-GFDL-fix_OM4_025_preprocessing' into dev/gfdl a4918b8 Updated preprocessing of OM4 to use right MIDAS version 34ba40a fixes back checkout instructions for FMS code 046ea9d update MIDAS for shared code b748b1b Merge pull request #245 from jkrasting/dev/gfdl e442119 refineDiag updates necessary for OM4_05 e18e50f Merge pull request #4 from StephenGriffies/dev/gfdl 686854d Update diag_table.MOM6 5b675fb Merge pull request #3 from StephenGriffies/dev/gfdl 430b119 Update diag_table.MOM6 8b68682 Merge branch 'jkrasting-user/jpk/OM4_05_updates_for_ESM4' into dev/gfdl 3f29d5c Cleaned up trailing whitespace 4c26fb5 Merge branch 'user/jpk/OM4_05_updates_for_ESM4' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_updates_for_ESM4 5d88d27 Merge branch 'Hallberg-NOAA-fix_geolonb' into dev/gfdl 12b16f4 MOM6/SIS2: Merge branch 'Hallberg-NOAA-fix_geolonb' into dev/gfdl 128352a Updated missed experiments 3ea8438 Diag table changes for ESM4 1a5e1ac Merge pull request #2 from NOAA-GFDL/dev/gfdl 1584ef2 Update diag_table.MOM6 0334100 Updated examples with code to correct GeoLonB 24106e5 icebergs: Merge pull request #59 from wfcooke/user/wfc/calving_restart_timestamp 2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl 5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args f45003c Use IO_LAYOUT=2,2 in global_ALE 5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl 93be8ff Adding new ideal_hurricane test case 9f11b05 Updated examples with use_stress_mag d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl 98b627c Merge branch 'dev/master' into dev/gfdl 78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl 054912d Merge branch 'dev/master' into dev/gfdl 9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix 7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc 4bac59b Update examples with VERTEX_SHEAR a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl f1e9681 Merge branch 'dev/master' into dev/gfdl 5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03 48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl 0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master 20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15 72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl f2fd688 Disable KPP in single_column/BML experiment dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg 3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl ae71364 Travis: added script to build with OpenMP c465130 mkmf: Updated to allow -l option 7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl 28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl 1091210 MOM6: Merged dev/ncar into dev/master ef9adaa Merge pull request #1 from NOAA-GFDL/dev/gfdl fd12185 Revert "mkmf: Updated to latest version on master branch" 2beb300 mkmf: Updated to latest version on master branch 4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl 192fb89 Merge branch 'jkrasting-user/jpk/OM4_05_remap_overrides' into dev/gfdl ba3a9a8 *OM4: Updated doc files after configuration change d58aa84 Merge branch 'user/jpk/OM4_05_remap_overrides' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_remap_overrides 46b529c Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl b41a6f9 MOM6+SIS2: Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl b4874a7 Added missed doc updates from 42122e3b 42122e3 Merge branch 'debug_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-debug_params f42b1f4 Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl fe0320f MOM6: Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl e32f79b Updated missed MOM_parameter_doc files e472ac6 *Set MAX_TR_DIFFUSION_CFL = 2.0 in OM4_05 88f0662 MOM6: +Added run time parameter MAX_TR_DIFFUSION_CFL e1ebe6f Set USE_NET_FW_ADJUSTMENT_SIGN_BUG to False 4ddf555 MOM6 & SIS2: +Log debugging params to MOM_param_doc.debugging de69617 Removed Z_INIT_REMAP* overrides from OM4_05 eca64d3 MOM6-examples: *Added new OBC options to DOME test case 6be2e41 Merge branch 'dev/gfdl' of https://github.com/ESMG/MOM6-examples into dev/gfdl b7e190f MOM6: *Fixing more SIMPLE OBC problems. a4ee1a2 *OM4_025: Switch initial conditions from WOA05 to WOA13 1dd6f07 *OM4: Corrected salt restore file 422c229 OM4: DT_THERM = 7200 9e3fb8c *OM4_05: Switch initial conditions from WOA05 to WOA13 fcc2d7a OM4_05: Use more PEs during testing 5c25451 Added OBC options to DOME's MOM_input 144bcb7 *OM4: Use newer SeaWIFS and runoff datasets 5bdb986 *OM4: Updated dt_cpld to be consistent with production 1dc7975 MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_MEKE_Ku_loop' into dev/gfdl a5c3ba5 *MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl a25c232 Merge pull request #219 from Hallberg-NOAA/add_SIS2_diagnostics 2391b0d MOM6: Merge pull request #742 from adcroft/add-chl-varname-parameter 37baa83 SIS2: Merge branch 'Hallberg-NOAA-dev/gfdl' into dev/gfdl 2d3e816 SIS2: +Added ice_melt and fsitherm diagnostics 545294f Merge pull request #220 from jkrasting/OM4_05_diag_table aa03a5c Added separate diag_table.MOM6 for OM4_05 config aba6acc Removed heat_content_vprec from CM4 diag_table 07a28c1 SIS2: +Added ice_melt and fsitherm diagnostics 6886957 *MOM6: Merge branch 'enhance_PGF' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl f7a76ee MOM6: Merge branch 'ashao-post_diag_chksums' into dev/gfdl 5ef68d0 MOM6: Merge branch 'ESMG-link_tracers' into dev/gfdl 1e88d50 OM4_025: Added preprocessing for PHC2 salt restoring file eb8a5ea OM4_05: Changed pathway for creating salt_restore.nc b8d8ad6 Merge pull request #217 from jkrasting/user/jpk/iaf_data_tables a800145 Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl 4253ea4 MOM6: Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl 09df91f Update MOM_docs for missed experiments in #218 70c69f0 Corrected MOM_override for global_ALE/layer 9810b34 Separate data table for IAF configuration f216a85 MOM6: +Moved pressure gradient parameters out of MOM_ALE 0a806d4 OM4: Added links for WOA2013 initial conditions 291c122 Merge branch 'jkrasting-update_OM4_05_datasets' into dev/gfdl 05c5a9b MOM6: Merge pull request #730 from adcroft/fix-z-init-many-layers 8422d3e OM4_05: Updated generated parameter docs b77ea8e Merge branch 'update_OM4_05_datasets' of https://github.com/jkrasting/MOM6-examples into jkrasting-update_OM4_05_datasets 1a7cd2f Added missing .gitignore files 153f554 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl e62d3f3 Merge branch 'dev-master-candidate-2018-02-28' into dev/master 2afd337 Updated runoff filename in OM4_05 data_table 1040824 Added symlink to static file 3ad53b4 Merge branch 'jkrasting-OM4_05_for_ESM4_dev' into dev/gfdl e60fec2 MOM6: Merge pull request #723 from adcroft/fix-geometric-savedays 954b690 (*)OM4_05: Replaced file-based background viscosity with function 0779f3b *OM4_05: Tidied up MOM_input 5bcd58b Updated grid_spec files for OM4_05 c133ce2 Edit input filenames in MOM_input and MOM_restore b277e81 Updated links to OM4_05 config INPUT files 9b10d87 Merge branch 'OM4_05_for_ESM4_dev' of https://github.com/jkrasting/MOM6-examples into jkrasting-OM4_05_for_ESM4_dev 6a9de59 Update parameters for OM4_05 configuration 37a36cf MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/add_param_to_avoid_checksum_compare' into dev/gfdl 76ed67e MOM6: Merge branch 'ashao-remapped_tendency_diagnostics' into dev/gfdl d0d0288 MOM6: Merge branch 'angus-g-flux-const' into dev/gfdl 5363923 SIS2: Merge branch 'wfcooke-user/wfc/iceberg_restart_timestamp' into dev/gfdl 05e27fe MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl dbe9f18 MOM6: +Restructured step_MOM(2) 172ce80 OM4_05 preproc: fixes meta-data cdb4936 OM4_05 preproc: cleaned up Makefile fed549a MOM6: Merge branch 'ESMG-fixdome' into dev/gfdl 6087290 Merge pull request #210 from MJHarrison-GFDL/user/mjh/OM4_05_preprocessing 6056316 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl f27f972 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl ae734ca Added missed MOM_parameter_doc.all 7ec313f Fix lingering issues with COREv2 input datasets 3634224 MOM6: Removed trailing blanks from two lines 599e8f4 MOM6: +Restructured step_MOM ca3659b Merge branch 'dev/gfdl' into restructure_step_MOM b6ec3b7 Merge branch 'dev/gfdl' into restructure_step_MOM 24922b0 Includes SGS topograpy variance in ocean_topog.nc - this was inadvertantly removed in a previous commit 1491a53 No longer need to modify time axis info when processing PHC data 83391f6 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 7a465df Updates for the COREv2 protocol experiments - Jenkins is copying PHC salinity restoring data from /archive/gold/datasets file which has header adjustments needed by FMS. - new answers for salt_restore.nc 0119c49 OM4_05: Replaceed user paths with centralized source for data 73447e4 Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl 5428b4e Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing c4909da fix bad path for PHC data and dependency for tidal_amplitude.nc 2dff48e Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl c9fd7cb MOM6: Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl f905634 Merge branch 'correct_diabatic_clock' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_diabatic_clock e18bedd icebergs: Merge pull request #58 from wfcooke/user/wfc/iceberg_restart_timestamp b0b5547 Merge branch 'dev-master-candidate-2018-02-06' into dev/master b8e6d95 MOM6: Merge branch 'dev-master-candidate-2018-02-06' into dev/master 6bfe277 MOM6: *Corrected the clock as seen by diabatic processes 0a8a1f8 Corrected ENERGYSAVEDAYS in DOME/MOM_input 22952c8 Added static_input.nml for Baltic_OM4_025 dbbbb12 remove JRA salt restoring file from checksums 9bb7fca Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 0b355f8 new answers for salt_restore b115dad Switch to COREv2 PHC file for salt restoring. 6c37e76 New answers for OM4_05 preprocessing 085f03c Fix previous commit gave the wrong topography. - The topo_edits file was derived by differencing a previously constructed bathy file with the first guess. a7b2723 MOM6: Merge pull request #707 from adcroft/fix-nan-in-radiation-obc 87da7fb icebergs: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_ensemble_restart_filenames' into dev/gfdl 50e93ea Corrected names of OM4_05 pp files to reflect resolution c8c4aba Added missing .datasets link in Baltic_OM4_025 d32dab3 Merge branch 'ashao-add_OM4_025' into dev/gfdl 4afb0a3 Baltic_OM4_025: Cleaned up paths and symbolic links 7b526b0 Baltic_OM4_05: Corrected some symbolic links 7f29a58 OM4_025: Undo changes from bad commit 8dea726 Merge branch 'add_OM4_025' of https://github.com/ashao/MOM6-examples into ashao-add_OM4_025 ba33c6f Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl a7d8ebb OM4 preproc: Remove unnecessary copies from archive 6a0c009 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 070e872 new answers for mosaic_ocean.1080x768/atmos_mosaic_tile1Xland_mosaic_tile1.cdl c0052ad Merge branch 'ashao-add_Baltic_OM4_05' into dev/gfdl bbffa81 Baltic_OM4_05: Cleaned up paths in symbolic links 09b6904 Merge branch 'add_Baltic_OM4_05' of https://github.com/ashao/MOM6-examples into ashao-add_Baltic_OM4_05 7d7e199 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl d44a5fa Merge branch 'restructure_MOM_CS' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_MOM_CS dd0d3e1 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl aa386eb Corrected MOM_parameter_doc f3c30c4 MOM6: +Moved u, v, and h diagnostics & other changes cb9bca3 MOM6: Merge branch 'ashao-collapse_vertmap_ndiff_diags' into dev/gfdl 16df984 Include runoff in checksums file 1b2b5b4 updates for Jenkins and md5sum updates for landxatm mosaic d67e280 MOM6: +Made MOM_control_struct opaque 2d1a063 Merge pull request #203 from jkrasting/user/jpk/section_transport_fix 9a830de Merge pull request #204 from jkrasting/user/jpk/change_scalar_precision 1223fb4 MOM6: Merge branch 'travissluka-bug-netfw-zero' into dev/gfdl addcc92 *MOM6: Merge branch 'ashao-ndiff_filter_unstable_stratified' into dev/gfdl 8bff5ee MOM6: Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl 8a400d0 Fill SSS restore field land values with 0 and get rid of soft links aac8b54 MOM6: Merge branch 'wfcooke-user/wfc/grid_initialization' into dev/gfdl 5adac64 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 421795d Regridding of JRA55-do-suppl data to OM4_05 grid a091b5c Updates to OM4_05 preprocessing 29ecd96 Merge branch 'user/mjh/OM4_05_preprocessing' of https://github.com/MJHarrison-GFDL/MOM6-examples into dev/gfdl 4f792a2 MOM6: +Merged in PR with documentation corrections e37d28c Changed precision for ocean_scalar* output 67b88a0 Corrected diag_table for salt restoring diagnostic ad0dbd7 Add pp/ts/daily/5yr option for section trans. plots f819a2e Merge branch 'underflow_external_gwave' of https://github.com/Hallberg-NOAA/MOM6-examples into dev/gfdl da2c832 MOM6: +Merged in ESMG-dumbbell f43150e *Set VEL_UNDERFLOW in external_gwave 55c4028 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl 0e557d4 MOM6: Merge pull request #680 from Hallberg-NOAA/restructure_step_MOM da9141a MOM6: Merge pull request #679 from Hallberg-NOAA/reform_convert_thickness 11a19b0 MOM6: Option for boundary extrapolation in main remapping 027c518 fix topo mismatch from current prod runs. Added IAF runoff 81b6765 Fix for environment change at GFDL e96509c Merge branch 'OM4-maintenance' into dev/gfdl c5d4c49 Add a Baltic_OM4_025 for development purposes 8c03e4e Uncomment out lines in the make_from_OM4_05 script 540c554 Adds Baltic OM4_05 test case 1f82805 MOM6: Merge pull request #674 from Hallberg-NOAA/reform_convert_thickness c6eb8be Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 0fb4dc3 Merge branch 'reform_convert_thickness' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-reform_convert_thickness 650daf8 Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 149825e Merge branch 'dev/gfdl' into reform_convert_thickness 2011774 Merge branch 'dev/gfdl' into reform_convert_thickness b793b3f MOM6: *Refactored convert_thickness 104627e (*)MOM6: Merge pull request #666 from Hallberg-NOAA/restructure_step_MOM 55838d6 mkmf: Fixes for symbolically linked files 16b4b4f Merge branch 'dev/master' into dev/gfdl c1cb38c MOM6: Bringing up to date for purpose of dev/master PR 12ff1c5 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl bbe3c65 Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_step_MOM edb0529 FMS: Updated to warsaw_201710 9452ed2 Added ocean_only/tides_025 test case 2bc46af MOM6: Changes related to restructuring MOM.F90 539a74d MOM6: Converted outside land masker to use tiles. 96b99d3 Merge branch 'OM4-maintenance' into dev/gfdl 17d0228 Merge branch 'Hallberg-NOAA-tide_support' into dev/gfdl 8c037c5 Merge branch 'tide_support' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-tide_support 6b18621 Merge branch 'OM4-maintenance' into dev/gfdl ac58394 MOM6: Made 4 commits to support barotropic tides 22eb9a9 MOM6: +Made 4 commits to support barotropic tides 20b0aeb +Added mean density and heat capacity diagnostics 1f1d57c +Geometric progression for ENERGYSAVEDAYS fad8ff2 MOM6: +Corrected available_diags file frazil entries 051a0ad Merge pull request #181 from jkrasting/user/jpk/webapp_updates_20171010 c95392e Use only 2 cores for multi-core Travis-CI tests 660b42c MOM6: Merge branch 'NCAR-dev/ncar' into dev/master d9dd61d MOM6: Merge branch 'MJHarrison-GFDL-HVisc_masking' into dev/gfdl 5d867c1 MOM6: Merge branch 'MJHarrison-GFDL-SfcRestoringMask' into dev/gfdl 78fadfa Updated cmocean module import
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ESM4/v1.0.32778d356 · ·
ESM4/v1.0.3 From commit 2778d3566e01c "ESM4 maintenance (#263)": * Updates to run OMIP, slab-model configs with Xanadu - Updates to calling data_override needed for generic_abiotic.F90 - Updates to SIS to make compatible with slab-model config - New logic to flag old-style restarts that use K[d,v]_turb
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OMIP1/v1.0.0192fb89b · ·
OMIP1/v1.0.0 - Version used in OMIP1 experiments. - dora experiment IDs 980, 985, 986, 987, 1162 - Tag is equivalent to tags dev/gfdl/2018.04.11 and ESM4/v1.0.0
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ESM4/v1.0.2c32a0b8e · ·
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ESM4/v1.0.17327f783 · ·
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om4/v1.0.5d5cb5443 · ·
om4/v1.0.5 Fixes to work with xanadu release - d5cb5443 MOM6:Merge branch 'nikizadehgfdl-xanadu_coupler_compatible' into OM4-maintenance
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dev/gfdl/2018.08.2524106e59 · ·
dev/gfdl/2018.08.25 24106e5 icebergs: Merge pull request #59 from wfcooke/user/wfc/calving_restart_timestamp 2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl 5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args f45003c Use IO_LAYOUT=2,2 in global_ALE 5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl 9f11b05 Updated examples with use_stress_mag d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl 98b627c Merge branch 'dev/master' into dev/gfdl 78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl 054912d Merge branch 'dev/master' into dev/gfdl 9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix 7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc 4bac59b Update examples with VERTEX_SHEAR a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl f1e9681 Merge branch 'dev/master' into dev/gfdl 5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03 48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl 0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master 20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15 72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl f2fd688 Disable KPP in single_column/BML experiment dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg 3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl ae71364 Travis: added script to build with OpenMP c465130 mkmf: Updated to allow -l option 7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl 28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl 1091210 MOM6: Merged dev/ncar into dev/master fd12185 Revert "mkmf: Updated to latest version on master branch" 2beb300 mkmf: Updated to latest version on master branch 4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl
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dev/gfdl/2018.08.242741a88d · ·
dev/gfdl/2018.08.24 2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl 5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args f45003c Use IO_LAYOUT=2,2 in global_ALE 5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl 9f11b05 Updated examples with use_stress_mag d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl 98b627c Merge branch 'dev/master' into dev/gfdl 78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4 ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl 054912d Merge branch 'dev/master' into dev/gfdl 9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix 7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc 4bac59b Update examples with VERTEX_SHEAR a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl f1e9681 Merge branch 'dev/master' into dev/gfdl 5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03 48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl 0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master 20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15 72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl f2fd688 Disable KPP in single_column/BML experiment dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg 3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl ae71364 Travis: added script to build with OpenMP c465130 mkmf: Updated to allow -l option 7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl 28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl 1091210 MOM6: Merged dev/ncar into dev/master fd12185 Revert "mkmf: Updated to latest version on master branch" 2beb300 mkmf: Updated to latest version on master branch 4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl
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dev/gfdl/2018.04.11192fb89b · ·
dev/gfdl/2018.04.11 192fb89 Merge branch 'jkrasting-user/jpk/OM4_05_remap_overrides' into dev/gfdl ba3a9a8 *OM4: Updated doc files after configuration change d58aa84 Merge branch 'user/jpk/OM4_05_remap_overrides' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_remap_overrides 46b529c Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl b41a6f9 MOM6+SIS2: Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl b4874a7 Added missed doc updates from 42122e3b 42122e3 Merge branch 'debug_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-debug_params f42b1f4 Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl fe0320f MOM6: Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl e32f79b Updated missed MOM_parameter_doc files e472ac6 *Set MAX_TR_DIFFUSION_CFL = 2.0 in OM4_05 88f0662 MOM6: +Added run time parameter MAX_TR_DIFFUSION_CFL e1ebe6f Set USE_NET_FW_ADJUSTMENT_SIGN_BUG to False 4ddf555 MOM6 & SIS2: +Log debugging params to MOM_param_doc.debugging de69617 Removed Z_INIT_REMAP* overrides from OM4_05 eca64d3 MOM6-examples: *Added new OBC options to DOME test case 6be2e41 Merge branch 'dev/gfdl' of https://github.com/ESMG/MOM6-examples into dev/gfdl b7e190f MOM6: *Fixing more SIMPLE OBC problems. 5c25451 Added OBC options to DOME's MOM_input
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ESM4/v1.0.0192fb89b · ·
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dev/gfdl/2018.04.06a4ee1a2b · ·
dev/gfdl/2018.04.06 a4ee1a2 *OM4_025: Switch initial conditions from WOA05 to WOA13 1dd6f07 *OM4: Corrected salt restore file 422c229 OM4: DT_THERM = 7200 9e3fb8c *OM4_05: Switch initial conditions from WOA05 to WOA13 fcc2d7a OM4_05: Use more PEs during testing
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dev/gfdl/2018.03.30144bcb7d · ·
dev/gfdl/2018.03.30 144bcb7 *OM4: Use newer SeaWIFS and runoff datasets 5bdb986 *OM4: Updated dt_cpld to be consistent with production 1dc7975 MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_MEKE_Ku_loop' into dev/gfdl a5c3ba5 *MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl a25c232 Merge pull request #219 from Hallberg-NOAA/add_SIS2_diagnostics 2391b0d MOM6: Merge pull request #742 from adcroft/add-chl-varname-parameter 37baa83 SIS2: Merge branch 'Hallberg-NOAA-dev/gfdl' into dev/gfdl 2d3e816 SIS2: +Added ice_melt and fsitherm diagnostics 545294f Merge pull request #220 from jkrasting/OM4_05_diag_table aa03a5c Added separate diag_table.MOM6 for OM4_05 config aba6acc Removed heat_content_vprec from CM4 diag_table 07a28c1 SIS2: +Added ice_melt and fsitherm diagnostics 6886957 *MOM6: Merge branch 'enhance_PGF' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl f7a76ee MOM6: Merge branch 'ashao-post_diag_chksums' into dev/gfdl 5ef68d0 MOM6: Merge branch 'ESMG-link_tracers' into dev/gfdl 1e88d50 OM4_025: Added preprocessing for PHC2 salt restoring file eb8a5ea OM4_05: Changed pathway for creating salt_restore.nc b8d8ad6 Merge pull request #217 from jkrasting/user/jpk/iaf_data_tables a800145 Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl 4253ea4 MOM6: Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl 09df91f Update MOM_docs for missed experiments in #218 70c69f0 Corrected MOM_override for global_ALE/layer 9810b34 Separate data table for IAF configuration f216a85 MOM6: +Moved pressure gradient parameters out of MOM_ALE
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dev/gfdl/2018.03.060a806d4a · ·
dev/gfdl/2018.03.06 0a806d4 OM4: Added links for WOA2013 initial conditions 291c122 Merge branch 'jkrasting-update_OM4_05_datasets' into dev/gfdl 05c5a9b MOM6: Merge pull request #730 from adcroft/fix-z-init-many-layers 8422d3e OM4_05: Updated generated parameter docs b77ea8e Merge branch 'update_OM4_05_datasets' of https://github.com/jkrasting/MOM6-examples into jkrasting-update_OM4_05_datasets 1a7cd2f Added missing .gitignore files 153f554 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl e62d3f3 Merge branch 'dev-master-candidate-2018-02-28' into dev/master 2afd337 Updated runoff filename in OM4_05 data_table 1040824 Added symlink to static file 3ad53b4 Merge branch 'jkrasting-OM4_05_for_ESM4_dev' into dev/gfdl e60fec2 MOM6: Merge pull request #723 from adcroft/fix-geometric-savedays 954b690 (*)OM4_05: Replaced file-based background viscosity with function 0779f3b *OM4_05: Tidied up MOM_input 5bcd58b Updated grid_spec files for OM4_05 c133ce2 Edit input filenames in MOM_input and MOM_restore b277e81 Updated links to OM4_05 config INPUT files 9b10d87 Merge branch 'OM4_05_for_ESM4_dev' of https://github.com/jkrasting/MOM6-examples into jkrasting-OM4_05_for_ESM4_dev 6a9de59 Update parameters for OM4_05 configuration 37a36cf MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/add_param_to_avoid_checksum_compare' into dev/gfdl 76ed67e MOM6: Merge branch 'ashao-remapped_tendency_diagnostics' into dev/gfdl d0d0288 MOM6: Merge branch 'angus-g-flux-const' into dev/gfdl 5363923 SIS2: Merge branch 'wfcooke-user/wfc/iceberg_restart_timestamp' into dev/gfdl 05e27fe MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl dbe9f18 MOM6: +Restructured step_MOM(2) 172ce80 OM4_05 preproc: fixes meta-data cdb4936 OM4_05 preproc: cleaned up Makefile fed549a MOM6: Merge branch 'ESMG-fixdome' into dev/gfdl 6087290 Merge pull request #210 from MJHarrison-GFDL/user/mjh/OM4_05_preprocessing 6056316 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl f27f972 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl ae734ca Added missed MOM_parameter_doc.all 7ec313f Fix lingering issues with COREv2 input datasets 3634224 MOM6: Removed trailing blanks from two lines 599e8f4 MOM6: +Restructured step_MOM ca3659b Merge branch 'dev/gfdl' into restructure_step_MOM b6ec3b7 Merge branch 'dev/gfdl' into restructure_step_MOM 24922b0 Includes SGS topograpy variance in ocean_topog.nc - this was inadvertantly removed in a previous commit 1491a53 No longer need to modify time axis info when processing PHC data 83391f6 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 7a465df Updates for the COREv2 protocol experiments - Jenkins is copying PHC salinity restoring data from /archive/gold/datasets file which has header adjustments needed by FMS. - new answers for salt_restore.nc 0119c49 OM4_05: Replaceed user paths with centralized source for data 73447e4 Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl 5428b4e Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing c4909da fix bad path for PHC data and dependency for tidal_amplitude.nc 2dff48e Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl c9fd7cb MOM6: Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl f905634 Merge branch 'correct_diabatic_clock' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_diabatic_clock e18bedd icebergs: Merge pull request #58 from wfcooke/user/wfc/iceberg_restart_timestamp b0b5547 Merge branch 'dev-master-candidate-2018-02-06' into dev/master b8e6d95 MOM6: Merge branch 'dev-master-candidate-2018-02-06' into dev/master 6bfe277 MOM6: *Corrected the clock as seen by diabatic processes 0a8a1f8 Corrected ENERGYSAVEDAYS in DOME/MOM_input 22952c8 Added static_input.nml for Baltic_OM4_025 dbbbb12 remove JRA salt restoring file from checksums 9bb7fca Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 0b355f8 new answers for salt_restore b115dad Switch to COREv2 PHC file for salt restoring. 6c37e76 New answers for OM4_05 preprocessing 085f03c Fix previous commit gave the wrong topography. - The topo_edits file was derived by differencing a previously constructed bathy file with the first guess. a7b2723 MOM6: Merge pull request #707 from adcroft/fix-nan-in-radiation-obc 87da7fb icebergs: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_ensemble_restart_filenames' into dev/gfdl 50e93ea Corrected names of OM4_05 pp files to reflect resolution c8c4aba Added missing .datasets link in Baltic_OM4_025 d32dab3 Merge branch 'ashao-add_OM4_025' into dev/gfdl 4afb0a3 Baltic_OM4_025: Cleaned up paths and symbolic links 7b526b0 Baltic_OM4_05: Corrected some symbolic links 7f29a58 OM4_025: Undo changes from bad commit 8dea726 Merge branch 'add_OM4_025' of https://github.com/ashao/MOM6-examples into ashao-add_OM4_025 ba33c6f Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl a7d8ebb OM4 preproc: Remove unnecessary copies from archive 6a0c009 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 070e872 new answers for mosaic_ocean.1080x768/atmos_mosaic_tile1Xland_mosaic_tile1.cdl c0052ad Merge branch 'ashao-add_Baltic_OM4_05' into dev/gfdl bbffa81 Baltic_OM4_05: Cleaned up paths in symbolic links 09b6904 Merge branch 'add_Baltic_OM4_05' of https://github.com/ashao/MOM6-examples into ashao-add_Baltic_OM4_05 7d7e199 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl d44a5fa Merge branch 'restructure_MOM_CS' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_MOM_CS dd0d3e1 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl aa386eb Corrected MOM_parameter_doc f3c30c4 MOM6: +Moved u, v, and h diagnostics & other changes cb9bca3 MOM6: Merge branch 'ashao-collapse_vertmap_ndiff_diags' into dev/gfdl 16df984 Include runoff in checksums file 1b2b5b4 updates for Jenkins and md5sum updates for landxatm mosaic d67e280 MOM6: +Made MOM_control_struct opaque 2d1a063 Merge pull request #203 from jkrasting/user/jpk/section_transport_fix 9a830de Merge pull request #204 from jkrasting/user/jpk/change_scalar_precision 1223fb4 MOM6: Merge branch 'travissluka-bug-netfw-zero' into dev/gfdl addcc92 *MOM6: Merge branch 'ashao-ndiff_filter_unstable_stratified' into dev/gfdl 8bff5ee MOM6: Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl 8a400d0 Fill SSS restore field land values with 0 and get rid of soft links aac8b54 MOM6: Merge branch 'wfcooke-user/wfc/grid_initialization' into dev/gfdl 5adac64 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 421795d Regridding of JRA55-do-suppl data to OM4_05 grid a091b5c Updates to OM4_05 preprocessing 29ecd96 Merge branch 'user/mjh/OM4_05_preprocessing' of https://github.com/MJHarrison-GFDL/MOM6-examples into dev/gfdl 4f792a2 MOM6: +Merged in PR with documentation corrections e37d28c Changed precision for ocean_scalar* output 67b88a0 Corrected diag_table for salt restoring diagnostic ad0dbd7 Add pp/ts/daily/5yr option for section trans. plots f819a2e Merge branch 'underflow_external_gwave' of https://github.com/Hallberg-NOAA/MOM6-examples into dev/gfdl da2c832 MOM6: +Merged in ESMG-dumbbell f43150e *Set VEL_UNDERFLOW in external_gwave 55c4028 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl 0e557d4 MOM6: Merge pull request #680 from Hallberg-NOAA/restructure_step_MOM da9141a MOM6: Merge pull request #679 from Hallberg-NOAA/reform_convert_thickness 11a19b0 MOM6: Option for boundary extrapolation in main remapping 027c518 fix topo mismatch from current prod runs. Added IAF runoff 81b6765 Fix for environment change at GFDL e96509c Merge branch 'OM4-maintenance' into dev/gfdl 12f7ee2 More instances where ordering of axes limits should change 852cc39 Fixed bug in yzcompare bc70366 Changed ppfreq to monthly for MLD analysis 10357d5 Added 'ppfreq' key to manifest.json 800d000 Fixed issue with multiple files 25a99a2 Fixes poleward heat trans analysis 62473ce Updated cmocean module import c5d4c49 Add a Baltic_OM4_025 for development purposes 8c03e4e Uncomment out lines in the make_from_OM4_05 script 540c554 Adds Baltic OM4_05 test case 1f82805 MOM6: Merge pull request #674 from Hallberg-NOAA/reform_convert_thickness c6eb8be Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 0fb4dc3 Merge branch 'reform_convert_thickness' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-reform_convert_thickness 650daf8 Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 149825e Merge branch 'dev/gfdl' into reform_convert_thickness 2011774 Merge branch 'dev/gfdl' into reform_convert_thickness b793b3f MOM6: *Refactored convert_thickness 104627e (*)MOM6: Merge pull request #666 from Hallberg-NOAA/restructure_step_MOM 55838d6 mkmf: Fixes for symbolically linked files 16b4b4f Merge branch 'dev/master' into dev/gfdl c1cb38c MOM6: Bringing up to date for purpose of dev/master PR 12ff1c5 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl bbe3c65 Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_step_MOM edb0529 FMS: Updated to warsaw_201710 9452ed2 Added ocean_only/tides_025 test case 2bc46af MOM6: Changes related to restructuring MOM.F90 539a74d MOM6: Converted outside land masker to use tiles. 96b99d3 Merge branch 'OM4-maintenance' into dev/gfdl 36ee8e5 Merge pull request #191 from jkrasting/cmip6_analysis_updates 17d0228 Merge branch 'Hallberg-NOAA-tide_support' into dev/gfdl d6edb4d Transport analysis to work with monthly pp 8c037c5 Merge branch 'tide_support' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-tide_support 6b18621 Merge branch 'OM4-maintenance' into dev/gfdl ac58394 MOM6: Made 4 commits to support barotropic tides 22eb9a9 MOM6: +Made 4 commits to support barotropic tides 20b0aeb +Added mean density and heat capacity diagnostics 1f1d57c +Geometric progression for ENERGYSAVEDAYS fad8ff2 MOM6: +Corrected available_diags file frazil entries 051a0ad Merge pull request #181 from jkrasting/user/jpk/webapp_updates_20171010 f0c6afc Merge pull request #188 from jkrasting/refinediag_fix_20171103 96a8e5f Fixed typo in refineDiag_ocean_month_rho2.py 6a2f1fb Merge pull request #187 from jkrasting/refinediag_fix_20171103 5a724dc More robust refineDiag scripts 49795eb MOM6: Two PRs for MOM6 to resolve diagnostics issues e57d90d OM4: Turned off empty diagnostics in OM4_025 21b3db3 Removed LT_Enhancement from diag_table 60a055c MOM6: Removed masking of areas in ocean_static.nc c95392e Use only 2 cores for multi-core Travis-CI tests 660b42c MOM6: Merge branch 'NCAR-dev/ncar' into dev/master d9dd61d MOM6: Merge branch 'MJHarrison-GFDL-HVisc_masking' into dev/gfdl 5d867c1 MOM6: Merge branch 'MJHarrison-GFDL-SfcRestoringMask' into dev/gfdl 78fadfa Updated cmocean module import
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om4/v1.0.412f7ee2f · ·
om4/v1.0.4 Fixes for dora, analysis and post-processing - 12f7ee2 More instances where ordering of axes limits should change - 852cc39 Fixed bug in yzcompare - bc70366 Changed ppfreq to monthly for MLD analysis - 10357d5 Added 'ppfreq' key to manifest.json - 800d000 Fixed issue with multiple files - 25a99a2 Fixes poleward heat trans analysis - 62473ce Updated cmocean module import
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om4/v1.0.336ee8e56 · ·
om4/v1.0.3 - 36ee8e5 Merge pull request #191 from jkrasting/cmip6_analysis_updates - d6edb4d Transport analysis to work with monthly pp
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om4/v1.0.2f0c6afc4 · ·
om4/v1.0.2 f0c6afc Merge pull request #188 from jkrasting/refinediag_fix_20171103 96a8e5f Fixed typo in refineDiag_ocean_month_rho2.py
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om4/v1.0.16a2f1fb4 · ·
om4/v1.0.1 - Fixes for fails in the refine-diag step of post-processing 6a2f1fb Merge pull request #187 from jkrasting/refinediag_fix_20171103
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om4/v1.049795ebc · ·
om4/v1.0 This tags the final version of OM4 0.25-degree configuration. This tag is the first tag on branch OM4-maintenance which diverges from dev/gfdl at tag dev/gfdl/2017.10.19. Changes since dev/gfdl/2017.10.19: 49795eb MOM6: Two PRs for MOM6 to resolve diagnostics issues e57d90d OM4: Turned off empty diagnostics in OM4_025 21b3db3 Removed LT_Enhancement from diag_table 60a055c MOM6: Removed masking of areas in ocean_static.nc
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dev/gfdl/2017.10.196f87aeb5 · ·
dev/gfdl/2017.10.19 - Fixes for CMIP workflow and post-processing. - New feature in icebergs (6f87aeb) to help with apparent mass loss due to stuck icebergs. 6f87aeb icebergs: Merge pull request #57 from adcroft/berg_diffusion d779aed Merge pull request #183 from nikizadehgfdl/user/nikizadehgfdl/reset_exec_bit_python_scripts 5e8de3e Merge pull request #185 from jkrasting/ocean_static_script c36036e Added append_basin_mask.py script 01f14a3 Reset exec permissions of python scripts 96138c6 Merge pull request #182 from ashao/reorder_straits 4cbea5b Reorder indices of straits according to CMIP6/OMIP
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dev/gfdl/2017.10.05f15b9160 · ·
dev/gfdl/2017.10.05 - Changes resulting from QC'ing postprocessed data for CMIP6. - No configuration/code changes from dev/gfdl/2017.09.27, just diag_table and script changes. f15b916 Merge pull request #163 from jkrasting/basin_refinediag bcd2b90 Tidy-up odds and ends after QC 9647743 Added 'coordinates' attribute to basin/strait vars. 1ebf336 Removed call to calc_varaince.py 9d4536a Updated cell_methods attrs. for refined diags b1c65de Updated umo in diag_table 8fad2c9 Miscellaneous clean-ups from testing 29c2b13 Flexible mask tiling based on time dimension e8bd7e2 Merge remote branch 'origin/post_9_27_updates' into basin_refinediag ab64e2a Various fixes for mfo (straits) diagnostic f4c5c95 Added thkcello/volcello for rho2 output 839b026 Merge remote branch 'origin/post_9_27_updates' into basin_refinediag c7c3375 Updated diag table for transport diags 69f35ec Updated calc_variance.py 6ff7aac Modified interface to calc_w_from_convergence() b235c77 Masked Indo-Pacific heat transport below 34S 350462b Updated coordinates in rho2 refineDiag script 2ab368b Merge pull request #6 from ashao/add_mfo_diagnostic 5d039f6 Adds a script to calculate transport in straits 7f0ab79 Added hfbasin diagnostic to refineDiag script 769eb6b refineDiag script uses basin_codes.nc file b6a25d3 Merge pull request #5 from NOAA-GFDL/dev/gfdl b979772 Merge pull request #4 from ashao/add_wmo_to_refine_diag a38e983 w had the wrong sign because divergence was calculated, not convergence da8591d Include wmo as part of refine diags 52d52e3 Consolidated refineDiag updates 7173edb MOC reported on interfaces, not levels 47cb72e Initial commit of CMIP6 offline diag script 0814494 Merge pull request #3 from NOAA-GFDL/dev/master