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This project is mirrored from https://github.com/NOAA-GFDL/MOM6-examples.git. Pull mirroring updated .
  • dev/gfdl/2019.08.08
    dev/gfdl/2019.08.08
    
    6d6e02b Replaced local mask_tables with links
    ecc553c Added JRA55-do version of OM4
    d26b3ae Adds file-based rho2 diagnostic to OM4
    b7a1dd5 MOM6: Merge pull request #969 from marshallward/dia_diff_saln_fix
    a6cfa03 *MOM6/SIS2: Merge branch 'marshallward-hiprec' into dev/gfdl
    98fb6a1 Merge branch 'raphaeldussin-bump_mkmf_version' into dev/gfdl
    5b8bb33 Merge branch 'bump_mkmf_version' of https://github.com/raphaeldussin/MOM6-examples into raphaeldussin-bump_mkmf_version
    81d659d Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6-examples into dev/gfdl
    0a0fa94 bump mkmf version
    2394c28 Merge pull request #281 from raphaeldussin/fix_htrans_units
    d8a9d8f MOM6: Merge pull request #960 from breichl/user/bgr/Init_from_Z_add_scale_offset
    bb7f05a MOM6: Merge branch 'raphaeldussin-fix_transport_units' into dev/gfdl
    83938f6 fix units
    63e6cb9 Roll forward FMS to f2e2c86f6c0
    9738c67 MOM6: Merge branch 'Hallberg-NOAA-code_units_cleanup' into dev/gfdl
    1123cdb MOM6: Merge pull request #952 from marshallward/tanh_opacity
    c17c2be Merge branch 'marshallward-frictworkmax_param' into dev/gfdl
    9925bc0 MOM6: Merge pull request #950 from marshallward/frictworkmax_v3
    a797af8 Remove FrictWorkMax from global_ALE params
    711d8fa Merge branch 'dev/master' into dev/gfdl
    84e8725 Merge branch 'dev-master-candidate-2019-07-08' into dev/master
    ae16855 Merge branch 'Hallberg-NOAA-parameterizations_cleanup' into dev/gfdl
    5f57477 Updated submodule src/MOM6
    0607744 MOM6: Cleaned up vertical parameterization code
    3d11154 MOM6: Merge pull request #944 from Hallberg-NOAA/fix_line_lengths
    912a1ad Merge pull request #275 from ElizabethYankovsky/newexperiment
    bb8049a MOM6: Merge pull request #943 from adcroft/static--mode-fixes-for-pr-935
    0b01af1 Merge branch 'dev/master' into dev/gfdl
    799219b MOM6: Merge branch 'gustavo-marques-dev-master-candidate-2019-06-11' into dev/master
    af2f756 MOM6: Merge pull request #942 from marshallward/meke_kh_diag
    fbeb6ae Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6-examples into dev/gfdl
    fa65bff Merge pull request #274 from StephenGriffies/OM4_diag_table_updates
    af07b94 Adding .nc files
    0cb3b05 Changing gitignore
    f6b18b8 Adding the rotating gravity current experiment
    38a2aed Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into dev/gfdl
    141cb23 MOM6: Updated MOM6 to version of dev/GFDL with RGC_tracer code
    d4616fa min/max zos,tos; heat trans to annual
    07126b5 min/max zos,tos; heat trans to annual; remove unused ndiff diagn
    310bd73 Update MOM6
    01ac90f Disabled coverage job
    6e683dc MOM6: Merge branch 'breichl-user/bgr/OSBL_Updates' into dev/gfdl
    90da109 Merge branch 'Hallberg-NOAA-Fix_intersperse_ice_test' into dev/gfdl
    4d5cb05 Added needed empty CIOD_override file
    1f5b03f Merge branch 'Fix_intersperse_ice_test' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-Fix_intersperse_ice_test
    a7f0436 Updated the version of MOM6 to NOAA-GFDL/MOM6@41cfb68
    c73a0de Merge branch 'marshallward-z_diag_param_purge' into dev/gfdl
    71abe1c Z diag param purge
    ff18d3c Merge branch 'marshallward-no_zdiag_params' into dev/gfdl
    a0c6c20 Z diag purge: parameter update
    22f1cd9 Z diag purge
    8a7f8e2 *Fixed input.nml for Intersperse_ice_1deg test case
    3099ac3 Merge branch 'Hallberg-NOAA-remove_newlines' into dev/gfdl
    2def9a4 MOM6: Merge branch 'Hallberg-NOAA-remove_newlines' into dev/gfdl
    f7f2c4e Added updated SIS2 parameter doc files
    5db88e6 MOM6: +Removed hard newlines in get_param calls
    65474a8 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into dev/gfdl
    fcff994 MOM6: Merged MFJansen-GMplusBS_final-alt code
    6d30f17 Merge branch 'gustavo-marques-surface_flux_analysis_ocean_only_updates' into dev/gfdl
    4e9082f Minor tidy up of jupyter notebook
    d491c69 Merge branch 'surface_flux_analysis_ocean_only_updates' of https://github.com/gustavo-marques/MOM6-examples into gustavo-marques-surface_flux_analysis_ocean_only_updates
    69dcd9e Merge branch 'Hallberg-NOAA-set_vel_underflow' into dev/gfdl
    4478a07 Merge branch 'set_vel_underflow' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-set_vel_underflow
    ed230a4 Merge branch 'Hallberg-NOAA-double_gyre_depth_list_params' into dev/gfdl
    c30cdc2 Merge branch 'double_gyre_depth_list_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-double_gyre_depth_list_params
    9cc4181 Set VEL_UNDERFLOW = 1e-30 in 12 test cases
    a928df9 Changed double_gyre DEPTH_LIST parameter settings
    8d39a14 Add necessary link to datasets for new expt
    949cf34 Fix available_diags
    6693b97 Slurm conversion: reduced node count for coverage
    86b3ceb Switching from moab to slurm
    1275c4e Merge branch 'Hallberg-NOAA-add_interspersed_ice' into dev/gfdl
    3a9c367 Updated parameter doc files in Intersperse_ice_1deg
    f84e91f Merge branch 'add_interspersed_ice' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-add_interspersed_ice
    54367eb Merge branch 'Hallberg-NOAA-diabatic_aux_cleanup' into dev/gfdl
    a61e347 MOM6: Merge branch 'Hallberg-NOAA-diabatic_aux_cleanup' into dev/gfdl
    13d9e0c Added missed MOM_parameter_doc updates
    de7b070 Merge branch 'diabatic_aux_cleanup' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-diabatic_aux_cleanup
    aa70038 Merge branch 'dev/master' into dev/gfdl
    485e5a8 Merge branch 'dev-master-candidate-2019-04-26' into dev/master
    cbae9fd Use xanadu-fms version of gitlab scripts
    5e310e9 MOM6: Merge branch 'dev-master-candidate-2019-04-26' into dev/master
    69550e4 MOM6: +Extended MIN_SALINITY and fixed subML_N2
    5501702 MOM6: +(*)Added MIN_SALINITY and fixed subML_N2
    9d9e35b MOM6: Merge branch 'marshallward-dev/gfdl' into dev/gfdl
    1d13a81 MOM6: Merge pull request #915 from adcroft/xanadu-fms
    cf73a9a FMS switched to xanadu
    2bc3645 Merge branch 'dev-master-candidate-2018-04-22' into dev/master
    58fe79c MOM6: Merge branch 'dev-master-candidate-2018-04-22' into dev/master
    2eac211 Candidate for dev/master
    13f94b7 Update mkmf and specify version of test scripts
    ec17a4c Merge branch 'dev/master' into dev/gfdl
    4162cfc MOM6: Merge pull request from EMC-MOM6/feature/nuopccapPR to dev/master
    d1a6f3c SIS2: Merge branch 'Hallberg-NOAA-remove_Verona_interfaces' into dev/gfdl
    3951df3 MOM6: Merge pull request #869 from nikizadehgfdl/nikizadeh_diag_decimation
    9439342 Temporary rollback from xanadu
    8a3501a Add the new Intersperse_ice_1deg test case
    6526357 FMS: Updated to xanadu
    8859644 +(*)Updated coupler, SIS2 & MOM6 for interspersed ice
    78c1690 Merge pull request #259 from jkrasting/user/jpk/dora-fixes
    a285524 Save forcing and surface every 12 hours
    7584b48 Update MOM_parameter_doc.layout
    63e8d43 Update MOM_parameter_doc.layout
    dc97bea Set IO_LAYOUT = 1, 1
    42b93fb Update notebooks for layer and z - tendencies are now computed over 12 hours
    18ca692 Merge branch 'dev/master' into dev/gfdl
    c1f5aa7 MOM6: Merge branch 'gustavo-marques-sync_dev_master_19Dec18' into dev/master
    78de7eb Merge branch 'dev/gfdl' into user/jpk/dora-fixes
    583cf79 Update logical tests on None type
    128b95d Force integer type when slicing array
    c890333 Updates available_diags for global_ALE/layer
    c764ec7 Revert "Set days = 3"
    f82b7bf Merge pull request #255 from gustavo-marques/surface_flux_analysis_ocean_only
    68df911 Mentioned that tendencies are over one day.
    fe3145c Update Surface flux analysis Notebook
    ad0d3b2 available_diags changes because diag_table was updated
    2faf484 Set days   = 3
    14f0d20 Add fields and increase precision
    df55f6c Added random_numbers module to Travis-CI build
    b85fe5f MOM6: Merge branch 'hlkong-topoMEKE' into dev/gfdl
    e1069e2 Merge branch 'Hallberg-NOAA-document_user_params' into dev/gfdl
    08871b5 Merge branch 'document_user_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-document_user_params
    c558371 Document user code parameters
    43d933d Merge branch 'Hallberg-NOAA-use_unit_scaling_type' into dev/gfdl
    a3881e1 Use unit scaling type
    e6f3523 Merge branch 'dev/master' into dev/gfdl
    e0b2739 MOM6: Merge branch 'Hallberg-NOAA-test_depth_units' into dev/gfdl
    1a42956 MOM6: Merge branch 'gustavo-marques-fix_wd_register' into dev/gfdl
    9295738 Merge branch 'breichl-user/bgr/ideal_hurricane' into dev/gfdl
    0bb46d5 Updated the version of MOM6 used by MOM6_examples
    6467e88 Added updated MOM_parameter_doc files
    871ef70 Reverting rename of 'CVmix_SCM_tests' to 'CVMix_SCM_tests'.
    11296a5 Updates to input parameters inidealized_hurricane test case
    8297256 Updated CVMix_SCM_tests skin_warming_wind case for interior dtdz=0 (as in dev/gfdl). - dtdz was updated in MOM_override to be 0 in dev/gfdl, this commit is fixed to reflect that using the new scm TS init routine.
    a022d67 Merge branch 'dev/gfdl' into user/bgr/ideal_hurricane
    bf8f9bb MOM6: Merge branch 'Hallberg-NOAA-test_depth_units' into dev/gfdl
    df8432a Modifications to run the idealized_hurricane (3d) test case.  - MOM_input changed for a .1 day simulation for the test case.  - MOM_parameter files added  - .nc file added from .cdl file for vertical grid.  - ideal_hurr TS class changed to CVMix TS class for a corresponding PR to MOM6.  - This test-case also relies on a corresponding PR to MOM6
    d1f5614 Merge branch 'IdealHurricane' into user/bgr/ideal_hurricane
    158d51d Renamed CVmix_SCM_tests folder to CVMix_SCM_tests
    e500d54 Update to SCM_idealized_hurricane test case MOM_input file.
    f95ad83 Updating input files in CVMix test cases
    7da7cf3 Merge branch 'dev/master' into dev/gfdl
    585b9ce MOM6: Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master
    48536b4 Merge branch 'MJHarrison-GFDL-fix_OM4_025_preprocessing' into dev/gfdl
    a4918b8 Updated preprocessing of OM4 to use right MIDAS version
    34ba40a fixes back checkout instructions for FMS code
    046ea9d update MIDAS for shared code
    b748b1b Merge pull request #245 from jkrasting/dev/gfdl
    e442119 refineDiag updates necessary for OM4_05
    e18e50f Merge pull request #4 from StephenGriffies/dev/gfdl
    686854d Update diag_table.MOM6
    5b675fb Merge pull request #3 from StephenGriffies/dev/gfdl
    430b119 Update diag_table.MOM6
    8b68682 Merge branch 'jkrasting-user/jpk/OM4_05_updates_for_ESM4' into dev/gfdl
    3f29d5c Cleaned up trailing whitespace
    4c26fb5 Merge branch 'user/jpk/OM4_05_updates_for_ESM4' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_updates_for_ESM4
    5d88d27 Merge branch 'Hallberg-NOAA-fix_geolonb' into dev/gfdl
    12b16f4 MOM6/SIS2: Merge branch 'Hallberg-NOAA-fix_geolonb' into dev/gfdl
    128352a Updated missed experiments
    3ea8438 Diag table changes for ESM4
    1a5e1ac Merge pull request #2 from NOAA-GFDL/dev/gfdl
    1584ef2 Update diag_table.MOM6
    0334100 Updated examples with code to correct GeoLonB
    24106e5 icebergs: Merge pull request #59 from wfcooke/user/wfc/calving_restart_timestamp
    2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger
    b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl
    5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args
    f45003c Use IO_LAYOUT=2,2 in global_ALE
    5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename
    f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic
    e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl
    93be8ff Adding new ideal_hurricane test case
    9f11b05 Updated examples with use_stress_mag
    d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl
    98b627c Merge branch 'dev/master' into dev/gfdl
    78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    054912d Merge branch 'dev/master' into dev/gfdl
    9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master
    aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl
    e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl
    ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix
    ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix
    7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc
    4bac59b Update examples with VERTEX_SHEAR
    a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl
    f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl
    f1e9681 Merge branch 'dev/master' into dev/gfdl
    5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03
    48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl
    0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master
    f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master
    20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15
    72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl
    f2fd688 Disable KPP in single_column/BML experiment
    dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage
    d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg
    3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl
    ae71364 Travis: added script to build with OpenMP
    c465130 mkmf: Updated to allow -l option
    7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl
    28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt
    b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl
    c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl
    1091210 MOM6: Merged dev/ncar into dev/master
    ef9adaa Merge pull request #1 from NOAA-GFDL/dev/gfdl
    fd12185 Revert "mkmf: Updated to latest version on master branch"
    2beb300 mkmf: Updated to latest version on master branch
    4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep
    b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl
    192fb89 Merge branch 'jkrasting-user/jpk/OM4_05_remap_overrides' into dev/gfdl
    ba3a9a8 *OM4: Updated doc files after configuration change
    d58aa84 Merge branch 'user/jpk/OM4_05_remap_overrides' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_remap_overrides
    46b529c Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl
    b41a6f9 MOM6+SIS2: Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl
    b4874a7 Added missed doc updates from 42122e3b
    42122e3 Merge branch 'debug_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-debug_params
    f42b1f4 Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl
    fe0320f MOM6: Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl
    e32f79b Updated missed MOM_parameter_doc files
    e472ac6 *Set MAX_TR_DIFFUSION_CFL = 2.0 in OM4_05
    88f0662 MOM6: +Added run time parameter MAX_TR_DIFFUSION_CFL
    e1ebe6f Set USE_NET_FW_ADJUSTMENT_SIGN_BUG to False
    4ddf555 MOM6 & SIS2: +Log debugging params to MOM_param_doc.debugging
    de69617 Removed Z_INIT_REMAP* overrides from OM4_05
    eca64d3 MOM6-examples: *Added new OBC options to DOME test case
    6be2e41 Merge branch 'dev/gfdl' of https://github.com/ESMG/MOM6-examples into dev/gfdl
    b7e190f MOM6: *Fixing more SIMPLE OBC problems.
    a4ee1a2 *OM4_025: Switch initial conditions from WOA05 to WOA13
    1dd6f07 *OM4: Corrected salt restore file
    422c229 OM4: DT_THERM = 7200
    9e3fb8c *OM4_05: Switch initial conditions from WOA05 to WOA13
    fcc2d7a OM4_05: Use more PEs during testing
    5c25451 Added OBC options to DOME's MOM_input
    144bcb7 *OM4: Use newer SeaWIFS and runoff datasets
    5bdb986 *OM4: Updated dt_cpld to be consistent with production
    1dc7975 MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_MEKE_Ku_loop' into dev/gfdl
    a5c3ba5 *MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    a25c232 Merge pull request #219 from Hallberg-NOAA/add_SIS2_diagnostics
    2391b0d MOM6: Merge pull request #742 from adcroft/add-chl-varname-parameter
    37baa83 SIS2: Merge branch 'Hallberg-NOAA-dev/gfdl' into dev/gfdl
    2d3e816 SIS2: +Added ice_melt and fsitherm diagnostics
    545294f Merge pull request #220 from jkrasting/OM4_05_diag_table
    aa03a5c Added separate diag_table.MOM6 for OM4_05 config
    aba6acc Removed heat_content_vprec from CM4 diag_table
    07a28c1 SIS2: +Added ice_melt and fsitherm diagnostics
    6886957 *MOM6: Merge branch 'enhance_PGF' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl
    f7a76ee MOM6: Merge branch 'ashao-post_diag_chksums' into dev/gfdl
    5ef68d0 MOM6: Merge branch 'ESMG-link_tracers' into dev/gfdl
    1e88d50 OM4_025: Added preprocessing for PHC2 salt restoring file
    eb8a5ea OM4_05: Changed pathway for creating salt_restore.nc
    b8d8ad6 Merge pull request #217 from jkrasting/user/jpk/iaf_data_tables
    a800145 Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl
    4253ea4 MOM6: Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl
    09df91f Update MOM_docs for missed experiments in #218
    70c69f0 Corrected MOM_override for global_ALE/layer
    9810b34 Separate data table for IAF configuration
    f216a85 MOM6: +Moved pressure gradient parameters out of MOM_ALE
    0a806d4 OM4: Added links for WOA2013 initial conditions
    291c122 Merge branch 'jkrasting-update_OM4_05_datasets' into dev/gfdl
    05c5a9b MOM6: Merge pull request #730 from adcroft/fix-z-init-many-layers
    8422d3e OM4_05: Updated generated parameter docs
    b77ea8e Merge branch 'update_OM4_05_datasets' of https://github.com/jkrasting/MOM6-examples into jkrasting-update_OM4_05_datasets
    1a7cd2f Added missing .gitignore files
    153f554 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    e62d3f3 Merge branch 'dev-master-candidate-2018-02-28' into dev/master
    2afd337 Updated runoff filename in OM4_05 data_table
    1040824 Added symlink to static file
    3ad53b4 Merge branch 'jkrasting-OM4_05_for_ESM4_dev' into dev/gfdl
    e60fec2 MOM6: Merge pull request #723 from adcroft/fix-geometric-savedays
    954b690 (*)OM4_05: Replaced file-based background viscosity with function
    0779f3b *OM4_05: Tidied up MOM_input
    5bcd58b Updated grid_spec files for OM4_05
    c133ce2 Edit input filenames in MOM_input and MOM_restore
    b277e81 Updated links to OM4_05 config INPUT files
    9b10d87 Merge branch 'OM4_05_for_ESM4_dev' of https://github.com/jkrasting/MOM6-examples into jkrasting-OM4_05_for_ESM4_dev
    6a9de59 Update parameters for OM4_05 configuration
    37a36cf MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/add_param_to_avoid_checksum_compare' into dev/gfdl
    76ed67e MOM6: Merge branch 'ashao-remapped_tendency_diagnostics' into dev/gfdl
    d0d0288 MOM6: Merge branch 'angus-g-flux-const' into dev/gfdl
    5363923 SIS2: Merge branch 'wfcooke-user/wfc/iceberg_restart_timestamp' into dev/gfdl
    05e27fe MOM6:  Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    dbe9f18 MOM6: +Restructured step_MOM(2)
    172ce80 OM4_05 preproc: fixes meta-data
    cdb4936 OM4_05 preproc: cleaned up Makefile
    fed549a MOM6: Merge branch 'ESMG-fixdome' into dev/gfdl
    6087290 Merge pull request #210 from MJHarrison-GFDL/user/mjh/OM4_05_preprocessing
    6056316 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    f27f972 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    ae734ca Added missed MOM_parameter_doc.all
    7ec313f Fix lingering issues with COREv2 input datasets
    3634224 MOM6: Removed trailing blanks from two lines
    599e8f4 MOM6: +Restructured step_MOM
    ca3659b Merge branch 'dev/gfdl' into restructure_step_MOM
    b6ec3b7 Merge branch 'dev/gfdl' into restructure_step_MOM
    24922b0 Includes SGS topograpy variance in ocean_topog.nc 	 - this was inadvertantly removed in a previous commit
    1491a53 No longer need to modify time axis info when processing PHC data
    83391f6 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    7a465df Updates for the COREv2 protocol experiments 	- Jenkins is copying PHC salinity restoring 	data from /archive/gold/datasets file which has 	header adjustments needed by FMS. 	- new answers for salt_restore.nc
    0119c49 OM4_05: Replaceed user paths with centralized source for data
    73447e4 Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl
    5428b4e Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    c4909da fix bad path for PHC data and dependency for tidal_amplitude.nc
    2dff48e Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl
    c9fd7cb MOM6: Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl
    f905634 Merge branch 'correct_diabatic_clock' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_diabatic_clock
    e18bedd icebergs: Merge pull request #58 from wfcooke/user/wfc/iceberg_restart_timestamp
    b0b5547 Merge branch 'dev-master-candidate-2018-02-06' into dev/master
    b8e6d95 MOM6: Merge branch 'dev-master-candidate-2018-02-06' into dev/master
    6bfe277 MOM6: *Corrected the clock as seen by diabatic processes
    0a8a1f8 Corrected ENERGYSAVEDAYS in DOME/MOM_input
    22952c8 Added static_input.nml for Baltic_OM4_025
    dbbbb12 remove JRA salt restoring file from checksums
    9bb7fca Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    0b355f8 new answers for salt_restore
    b115dad Switch to COREv2 PHC file for salt restoring.
    6c37e76 New answers for OM4_05 preprocessing
    085f03c Fix previous commit gave the wrong topography.   - The topo_edits file was derived by differencing     a previously constructed bathy file with the first guess.
    a7b2723 MOM6: Merge pull request #707 from adcroft/fix-nan-in-radiation-obc
    87da7fb icebergs: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_ensemble_restart_filenames' into dev/gfdl
    50e93ea Corrected names of OM4_05 pp files to reflect resolution
    c8c4aba Added missing .datasets link in Baltic_OM4_025
    d32dab3 Merge branch 'ashao-add_OM4_025' into dev/gfdl
    4afb0a3 Baltic_OM4_025: Cleaned up paths and symbolic links
    7b526b0 Baltic_OM4_05: Corrected some symbolic links
    7f29a58 OM4_025: Undo changes from bad commit
    8dea726 Merge branch 'add_OM4_025' of https://github.com/ashao/MOM6-examples into ashao-add_OM4_025
    ba33c6f Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl
    a7d8ebb OM4 preproc: Remove unnecessary copies from archive
    6a0c009 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing
    070e872 new answers for mosaic_ocean.1080x768/atmos_mosaic_tile1Xland_mosaic_tile1.cdl
    c0052ad Merge branch 'ashao-add_Baltic_OM4_05' into dev/gfdl
    bbffa81 Baltic_OM4_05: Cleaned up paths in symbolic links
    09b6904 Merge branch 'add_Baltic_OM4_05' of https://github.com/ashao/MOM6-examples into ashao-add_Baltic_OM4_05
    7d7e199 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl
    d44a5fa Merge branch 'restructure_MOM_CS' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_MOM_CS
    dd0d3e1 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl
    aa386eb Corrected MOM_parameter_doc
    f3c30c4 MOM6: +Moved u, v, and h diagnostics & other changes
    cb9bca3 MOM6: Merge branch 'ashao-collapse_vertmap_ndiff_diags' into dev/gfdl
    16df984 Include runoff in checksums file
    1b2b5b4 updates for Jenkins and md5sum updates for landxatm mosaic
    d67e280 MOM6: +Made MOM_control_struct opaque
    2d1a063 Merge pull request #203 from jkrasting/user/jpk/section_transport_fix
    9a830de Merge pull request #204 from jkrasting/user/jpk/change_scalar_precision
    1223fb4 MOM6: Merge branch 'travissluka-bug-netfw-zero' into dev/gfdl
    addcc92 *MOM6: Merge branch 'ashao-ndiff_filter_unstable_stratified' into dev/gfdl
    8bff5ee MOM6: Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl
    8a400d0 Fill SSS restore field land values with 0 and get rid of soft links
    aac8b54 MOM6: Merge branch 'wfcooke-user/wfc/grid_initialization' into dev/gfdl
    5adac64 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing
    421795d Regridding of JRA55-do-suppl data to OM4_05 grid
    a091b5c Updates to OM4_05 preprocessing
    29ecd96 Merge branch 'user/mjh/OM4_05_preprocessing' of https://github.com/MJHarrison-GFDL/MOM6-examples into dev/gfdl
    4f792a2 MOM6: +Merged in PR with documentation corrections
    e37d28c Changed precision for ocean_scalar* output
    67b88a0 Corrected diag_table for salt restoring diagnostic
    ad0dbd7 Add pp/ts/daily/5yr option for section trans. plots
    f819a2e Merge branch 'underflow_external_gwave' of https://github.com/Hallberg-NOAA/MOM6-examples into dev/gfdl
    da2c832 MOM6: +Merged in ESMG-dumbbell
    f43150e *Set VEL_UNDERFLOW in external_gwave
    55c4028 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    0e557d4 MOM6: Merge pull request #680 from Hallberg-NOAA/restructure_step_MOM
    da9141a MOM6: Merge pull request #679 from Hallberg-NOAA/reform_convert_thickness
    11a19b0 MOM6: Option for boundary extrapolation in main remapping
    027c518 fix topo mismatch from current prod runs. Added IAF runoff
    81b6765 Fix for environment change at GFDL
    e96509c Merge branch 'OM4-maintenance' into dev/gfdl
    c5d4c49 Add a Baltic_OM4_025 for development purposes
    8c03e4e Uncomment out lines in the make_from_OM4_05 script
    540c554 Adds Baltic OM4_05 test case
    1f82805 MOM6: Merge pull request #674 from Hallberg-NOAA/reform_convert_thickness
    c6eb8be Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl
    0fb4dc3 Merge branch 'reform_convert_thickness' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-reform_convert_thickness
    650daf8 Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl
    149825e Merge branch 'dev/gfdl' into reform_convert_thickness
    2011774 Merge branch 'dev/gfdl' into reform_convert_thickness
    b793b3f MOM6: *Refactored convert_thickness
    104627e (*)MOM6: Merge pull request #666 from Hallberg-NOAA/restructure_step_MOM
    55838d6 mkmf: Fixes for symbolically linked files
    16b4b4f Merge branch 'dev/master' into dev/gfdl
    c1cb38c MOM6: Bringing up to date for purpose of dev/master PR
    12ff1c5 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    bbe3c65 Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_step_MOM
    edb0529 FMS: Updated to warsaw_201710
    9452ed2 Added ocean_only/tides_025 test case
    2bc46af MOM6: Changes related to restructuring MOM.F90
    539a74d MOM6: Converted outside land masker to use tiles.
    96b99d3 Merge branch 'OM4-maintenance' into dev/gfdl
    17d0228 Merge branch 'Hallberg-NOAA-tide_support' into dev/gfdl
    8c037c5 Merge branch 'tide_support' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-tide_support
    6b18621 Merge branch 'OM4-maintenance' into dev/gfdl
    ac58394 MOM6: Made 4 commits to support barotropic tides
    22eb9a9 MOM6: +Made 4 commits to support barotropic tides
    20b0aeb +Added mean density and heat capacity diagnostics
    1f1d57c +Geometric progression for ENERGYSAVEDAYS
    fad8ff2 MOM6: +Corrected available_diags file frazil entries
    051a0ad Merge pull request #181 from jkrasting/user/jpk/webapp_updates_20171010
    c95392e Use only 2 cores for multi-core Travis-CI tests
    660b42c MOM6: Merge branch 'NCAR-dev/ncar' into dev/master
    d9dd61d MOM6: Merge branch 'MJHarrison-GFDL-HVisc_masking' into dev/gfdl
    5d867c1 MOM6: Merge branch 'MJHarrison-GFDL-SfcRestoringMask' into dev/gfdl
    78fadfa Updated cmocean module import
    
  • ESM4/v1.0.3
    2778d356 · ESM4 maintenance (#263) ·
    ESM4/v1.0.3
    
    From commit 2778d3566e01c "ESM4 maintenance (#263)":
    
      * Updates to run OMIP, slab-model configs with Xanadu
    
        - Updates to calling data_override needed for generic_abiotic.F90
        - Updates to SIS to make compatible with slab-model config
        - New logic to flag old-style restarts that use K[d,v]_turb
  • OMIP1/v1.0.0 Release: Model source, parameters and scripts used in OMIP1 paper on OM4
    OMIP1/v1.0.0
    
    - Version used in OMIP1  experiments.
    - dora experiment IDs 980, 985, 986, 987, 1162
    - Tag is equivalent to tags dev/gfdl/2018.04.11 and ESM4/v1.0.0
  • ESM4/v1.0.2
  • ESM4/v1.0.1
  • om4/v1.0.5
    om4/v1.0.5
    
    Fixes to work with xanadu release
    - d5cb5443 MOM6:Merge branch 'nikizadehgfdl-xanadu_coupler_compatible' into OM4-maintenance
  • dev/gfdl/2018.08.25
    dev/gfdl/2018.08.25
    
    24106e5 icebergs: Merge pull request #59 from wfcooke/user/wfc/calving_restart_timestamp
    2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger
    b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl
    5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args
    f45003c Use IO_LAYOUT=2,2 in global_ALE
    5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename
    f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic
    e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl
    9f11b05 Updated examples with use_stress_mag
    d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl
    98b627c Merge branch 'dev/master' into dev/gfdl
    78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    054912d Merge branch 'dev/master' into dev/gfdl
    9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master
    aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl
    e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl
    ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix
    ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix
    7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc
    4bac59b Update examples with VERTEX_SHEAR
    a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl
    f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl
    f1e9681 Merge branch 'dev/master' into dev/gfdl
    5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03
    48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl
    0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master
    f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master
    20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15
    72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl
    f2fd688 Disable KPP in single_column/BML experiment
    dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage
    d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg
    3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl
    ae71364 Travis: added script to build with OpenMP
    c465130 mkmf: Updated to allow -l option
    7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl
    28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt
    b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl
    c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl
    1091210 MOM6: Merged dev/ncar into dev/master
    fd12185 Revert "mkmf: Updated to latest version on master branch"
    2beb300 mkmf: Updated to latest version on master branch
    4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep
    b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl
  • dev/gfdl/2018.08.24
    dev/gfdl/2018.08.24
    
    2741a88 MOM6: Merge pull request #844 from adcroft/avoid-domain_aux-for-wind-stagger
    b864fed MOM6: Merge branch 'Hallberg-NOAA-streamline_restore_state' into dev/gfdl
    5dcd7c3 SIS2: +Temporarily avoid new update_ocean_model args
    f45003c Use IO_LAYOUT=2,2 in global_ALE
    5007183 MOM6: Merge pull request #841 from adcroft/fix-oob-restart-filename
    f6ae30c MOM6: Merge pull request #839 from MJHarrison-GFDL/rotation_angle_diagnostic
    e795958 Merge branch 'Hallberg-NOAA-use_stress_mag' into dev/gfdl
    9f11b05 Updated examples with use_stress_mag
    d11c6a4 SIS2: Merge branch 'Hallberg-NOAA-add_stress_mag' into dev/gfdl
    98b627c Merge branch 'dev/master' into dev/gfdl
    78cfb2d MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    7e5d936 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    fbe2918 MOM6: Merge pull request #820 from adcroft/fix-doxy-1.8.4
    ed36e93 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    054912d Merge branch 'dev/master' into dev/gfdl
    9025815 MOM6: Merge branch 'gustavo-marques-update_KPP' into dev/master
    aeda3c9 SIS2: Merge branch 'Hallberg-NOAA-dOxyGenize_SIS2' into dev/gfdl
    e937dd8 Merge branch 'Hallberg-NOAA-vertex_shearmix' into dev/gfdl
    ea2a6be MOM6: Merge pull request #801 from Hallberg-NOAA/vertex_shearmix
    ab45a7d Merge branch 'vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-vertex_shearmix
    7632200 MOM6: Merge pull request #799 from adcroft/aniso-hor-visc
    4bac59b Update examples with VERTEX_SHEAR
    a2162e4 MOM6: Merge branch 'ESMG-cleaning' into dev/gfdl
    f894815 MOM6: *Merge branch 'ESMG-dev/esmg' into dev/gfdl
    f1e9681 Merge branch 'dev/master' into dev/gfdl
    5d17daf MOM6: Merge pull request #787 from NOAA-GFDL/dev-master-candidate-2018-06-03
    48d4f8d MOM6: Merge branch 'dev/master' into dev/gfdl
    0a13ed9 MOM6: Merge branch 'gustavo-marques-add_old_double_diffusion' into dev/master
    f2aa2bd MOM6: Merge branch 'gustavo-marques-legacy_diabatic_driver' into dev/master
    20799a1 MOM6: Merge pull request #774 from NOAA-GFDL/dev-master-candidate-2018-05-15
    72580e8 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    bed9677 Merge branch 'adcroft-disable-kpp-in-single-col-bml' into dev/gfdl
    f2fd688 Disable KPP in single_column/BML experiment
    dc9b61d gitlab: Adds testing of MOM6_parameter_doc and updates coverage
    d84538c MOM6: Merge pull request #760 from ESMG/dev/esmg
    3bcc768 MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA_rename' into dev/gfdl
    ae71364 Travis: added script to build with OpenMP
    c465130 mkmf: Updated to allow -l option
    7339de5 MOM6: Merge branch 'Hallberg-NOAA-correct_reset_dtbt' into dev/gfdl
    28a4377 Merge branch 'correct_reset_dtbt' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_reset_dtbt
    b06285a MOM6: Merge branch 'MJHarrison-GFDL-MOM6_DA' into dev/gfdl
    c903983 MOM6: Merged dev/ncar & dev/master into dev/gfdl
    1091210 MOM6: Merged dev/ncar into dev/master
    fd12185 Revert "mkmf: Updated to latest version on master branch"
    2beb300 mkmf: Updated to latest version on master branch
    4c080d1 MOM6: (*)Do not recalculate DTBT every coupled timestep
    b40aa92 MOM6: Merge branch 'breichl-breichl/user/bgr/waves_update' into dev/gfdl
  • dev/gfdl/2018.04.11
    dev/gfdl/2018.04.11
    
    192fb89 Merge branch 'jkrasting-user/jpk/OM4_05_remap_overrides' into dev/gfdl
    ba3a9a8 *OM4: Updated doc files after configuration change
    d58aa84 Merge branch 'user/jpk/OM4_05_remap_overrides' of https://github.com/jkrasting/MOM6-examples into jkrasting-user/jpk/OM4_05_remap_overrides
    46b529c Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl
    b41a6f9 MOM6+SIS2: Merge branch 'Hallberg-NOAA-debug_params' into dev/gfdl
    b4874a7 Added missed doc updates from 42122e3b
    42122e3 Merge branch 'debug_params' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-debug_params
    f42b1f4 Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl
    fe0320f MOM6: Merge branch 'Hallberg-NOAA-diffusion_CFL' into dev/gfdl
    e32f79b Updated missed MOM_parameter_doc files
    e472ac6 *Set MAX_TR_DIFFUSION_CFL = 2.0 in OM4_05
    88f0662 MOM6: +Added run time parameter MAX_TR_DIFFUSION_CFL
    e1ebe6f Set USE_NET_FW_ADJUSTMENT_SIGN_BUG to False
    4ddf555 MOM6 & SIS2: +Log debugging params to MOM_param_doc.debugging
    de69617 Removed Z_INIT_REMAP* overrides from OM4_05
    eca64d3 MOM6-examples: *Added new OBC options to DOME test case
    6be2e41 Merge branch 'dev/gfdl' of https://github.com/ESMG/MOM6-examples into dev/gfdl
    b7e190f MOM6: *Fixing more SIMPLE OBC problems.
    5c25451 Added OBC options to DOME's MOM_input
  • ESM4/v1.0.0
  • dev/gfdl/2018.04.06
    dev/gfdl/2018.04.06
    
    a4ee1a2 *OM4_025: Switch initial conditions from WOA05 to WOA13
    1dd6f07 *OM4: Corrected salt restore file
    422c229 OM4: DT_THERM = 7200
    9e3fb8c *OM4_05: Switch initial conditions from WOA05 to WOA13
    fcc2d7a OM4_05: Use more PEs during testing
  • dev/gfdl/2018.03.30
    dev/gfdl/2018.03.30
    
    144bcb7 *OM4: Use newer SeaWIFS and runoff datasets
    5bdb986 *OM4: Updated dt_cpld to be consistent with production
    1dc7975 MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_MEKE_Ku_loop' into dev/gfdl
    a5c3ba5 *MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    a25c232 Merge pull request #219 from Hallberg-NOAA/add_SIS2_diagnostics
    2391b0d MOM6: Merge pull request #742 from adcroft/add-chl-varname-parameter
    37baa83 SIS2: Merge branch 'Hallberg-NOAA-dev/gfdl' into dev/gfdl
    2d3e816 SIS2: +Added ice_melt and fsitherm diagnostics
    545294f Merge pull request #220 from jkrasting/OM4_05_diag_table
    aa03a5c Added separate diag_table.MOM6 for OM4_05 config
    aba6acc Removed heat_content_vprec from CM4 diag_table
    07a28c1 SIS2: +Added ice_melt and fsitherm diagnostics
    6886957 *MOM6: Merge branch 'enhance_PGF' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl
    f7a76ee MOM6: Merge branch 'ashao-post_diag_chksums' into dev/gfdl
    5ef68d0 MOM6: Merge branch 'ESMG-link_tracers' into dev/gfdl
    1e88d50 OM4_025: Added preprocessing for PHC2 salt restoring file
    eb8a5ea OM4_05: Changed pathway for creating salt_restore.nc
    b8d8ad6 Merge pull request #217 from jkrasting/user/jpk/iaf_data_tables
    a800145 Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl
    4253ea4 MOM6: Merge branch 'Hallberg-NOAA-enhance_PGF' into dev/gfdl
    09df91f Update MOM_docs for missed experiments in #218
    70c69f0 Corrected MOM_override for global_ALE/layer
    9810b34 Separate data table for IAF configuration
    f216a85 MOM6: +Moved pressure gradient parameters out of MOM_ALE
  • dev/gfdl/2018.03.06
    dev/gfdl/2018.03.06
    
    0a806d4 OM4: Added links for WOA2013 initial conditions
    291c122 Merge branch 'jkrasting-update_OM4_05_datasets' into dev/gfdl
    05c5a9b MOM6: Merge pull request #730 from adcroft/fix-z-init-many-layers
    8422d3e OM4_05: Updated generated parameter docs
    b77ea8e Merge branch 'update_OM4_05_datasets' of https://github.com/jkrasting/MOM6-examples into jkrasting-update_OM4_05_datasets
    1a7cd2f Added missing .gitignore files
    153f554 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl
    e62d3f3 Merge branch 'dev-master-candidate-2018-02-28' into dev/master
    2afd337 Updated runoff filename in OM4_05 data_table
    1040824 Added symlink to static file
    3ad53b4 Merge branch 'jkrasting-OM4_05_for_ESM4_dev' into dev/gfdl
    e60fec2 MOM6: Merge pull request #723 from adcroft/fix-geometric-savedays
    954b690 (*)OM4_05: Replaced file-based background viscosity with function
    0779f3b *OM4_05: Tidied up MOM_input
    5bcd58b Updated grid_spec files for OM4_05
    c133ce2 Edit input filenames in MOM_input and MOM_restore
    b277e81 Updated links to OM4_05 config INPUT files
    9b10d87 Merge branch 'OM4_05_for_ESM4_dev' of https://github.com/jkrasting/MOM6-examples into jkrasting-OM4_05_for_ESM4_dev
    6a9de59 Update parameters for OM4_05 configuration
    37a36cf MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/add_param_to_avoid_checksum_compare' into dev/gfdl
    76ed67e MOM6: Merge branch 'ashao-remapped_tendency_diagnostics' into dev/gfdl
    d0d0288 MOM6: Merge branch 'angus-g-flux-const' into dev/gfdl
    5363923 SIS2: Merge branch 'wfcooke-user/wfc/iceberg_restart_timestamp' into dev/gfdl
    05e27fe MOM6:  Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    dbe9f18 MOM6: +Restructured step_MOM(2)
    172ce80 OM4_05 preproc: fixes meta-data
    cdb4936 OM4_05 preproc: cleaned up Makefile
    fed549a MOM6: Merge branch 'ESMG-fixdome' into dev/gfdl
    6087290 Merge pull request #210 from MJHarrison-GFDL/user/mjh/OM4_05_preprocessing
    6056316 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    f27f972 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    ae734ca Added missed MOM_parameter_doc.all
    7ec313f Fix lingering issues with COREv2 input datasets
    3634224 MOM6: Removed trailing blanks from two lines
    599e8f4 MOM6: +Restructured step_MOM
    ca3659b Merge branch 'dev/gfdl' into restructure_step_MOM
    b6ec3b7 Merge branch 'dev/gfdl' into restructure_step_MOM
    24922b0 Includes SGS topograpy variance in ocean_topog.nc 	 - this was inadvertantly removed in a previous commit
    1491a53 No longer need to modify time axis info when processing PHC data
    83391f6 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    7a465df Updates for the COREv2 protocol experiments 	- Jenkins is copying PHC salinity restoring 	data from /archive/gold/datasets file which has 	header adjustments needed by FMS. 	- new answers for salt_restore.nc
    0119c49 OM4_05: Replaceed user paths with centralized source for data
    73447e4 Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl
    5428b4e Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    c4909da fix bad path for PHC data and dependency for tidal_amplitude.nc
    2dff48e Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl
    c9fd7cb MOM6: Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl
    f905634 Merge branch 'correct_diabatic_clock' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_diabatic_clock
    e18bedd icebergs: Merge pull request #58 from wfcooke/user/wfc/iceberg_restart_timestamp
    b0b5547 Merge branch 'dev-master-candidate-2018-02-06' into dev/master
    b8e6d95 MOM6: Merge branch 'dev-master-candidate-2018-02-06' into dev/master
    6bfe277 MOM6: *Corrected the clock as seen by diabatic processes
    0a8a1f8 Corrected ENERGYSAVEDAYS in DOME/MOM_input
    22952c8 Added static_input.nml for Baltic_OM4_025
    dbbbb12 remove JRA salt restoring file from checksums
    9bb7fca Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing
    0b355f8 new answers for salt_restore
    b115dad Switch to COREv2 PHC file for salt restoring.
    6c37e76 New answers for OM4_05 preprocessing
    085f03c Fix previous commit gave the wrong topography.   - The topo_edits file was derived by differencing     a previously constructed bathy file with the first guess.
    a7b2723 MOM6: Merge pull request #707 from adcroft/fix-nan-in-radiation-obc
    87da7fb icebergs: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_ensemble_restart_filenames' into dev/gfdl
    50e93ea Corrected names of OM4_05 pp files to reflect resolution
    c8c4aba Added missing .datasets link in Baltic_OM4_025
    d32dab3 Merge branch 'ashao-add_OM4_025' into dev/gfdl
    4afb0a3 Baltic_OM4_025: Cleaned up paths and symbolic links
    7b526b0 Baltic_OM4_05: Corrected some symbolic links
    7f29a58 OM4_025: Undo changes from bad commit
    8dea726 Merge branch 'add_OM4_025' of https://github.com/ashao/MOM6-examples into ashao-add_OM4_025
    ba33c6f Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl
    a7d8ebb OM4 preproc: Remove unnecessary copies from archive
    6a0c009 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing
    070e872 new answers for mosaic_ocean.1080x768/atmos_mosaic_tile1Xland_mosaic_tile1.cdl
    c0052ad Merge branch 'ashao-add_Baltic_OM4_05' into dev/gfdl
    bbffa81 Baltic_OM4_05: Cleaned up paths in symbolic links
    09b6904 Merge branch 'add_Baltic_OM4_05' of https://github.com/ashao/MOM6-examples into ashao-add_Baltic_OM4_05
    7d7e199 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl
    d44a5fa Merge branch 'restructure_MOM_CS' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_MOM_CS
    dd0d3e1 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl
    aa386eb Corrected MOM_parameter_doc
    f3c30c4 MOM6: +Moved u, v, and h diagnostics & other changes
    cb9bca3 MOM6: Merge branch 'ashao-collapse_vertmap_ndiff_diags' into dev/gfdl
    16df984 Include runoff in checksums file
    1b2b5b4 updates for Jenkins and md5sum updates for landxatm mosaic
    d67e280 MOM6: +Made MOM_control_struct opaque
    2d1a063 Merge pull request #203 from jkrasting/user/jpk/section_transport_fix
    9a830de Merge pull request #204 from jkrasting/user/jpk/change_scalar_precision
    1223fb4 MOM6: Merge branch 'travissluka-bug-netfw-zero' into dev/gfdl
    addcc92 *MOM6: Merge branch 'ashao-ndiff_filter_unstable_stratified' into dev/gfdl
    8bff5ee MOM6: Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl
    8a400d0 Fill SSS restore field land values with 0 and get rid of soft links
    aac8b54 MOM6: Merge branch 'wfcooke-user/wfc/grid_initialization' into dev/gfdl
    5adac64 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing
    421795d Regridding of JRA55-do-suppl data to OM4_05 grid
    a091b5c Updates to OM4_05 preprocessing
    29ecd96 Merge branch 'user/mjh/OM4_05_preprocessing' of https://github.com/MJHarrison-GFDL/MOM6-examples into dev/gfdl
    4f792a2 MOM6: +Merged in PR with documentation corrections
    e37d28c Changed precision for ocean_scalar* output
    67b88a0 Corrected diag_table for salt restoring diagnostic
    ad0dbd7 Add pp/ts/daily/5yr option for section trans. plots
    f819a2e Merge branch 'underflow_external_gwave' of https://github.com/Hallberg-NOAA/MOM6-examples into dev/gfdl
    da2c832 MOM6: +Merged in ESMG-dumbbell
    f43150e *Set VEL_UNDERFLOW in external_gwave
    55c4028 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    0e557d4 MOM6: Merge pull request #680 from Hallberg-NOAA/restructure_step_MOM
    da9141a MOM6: Merge pull request #679 from Hallberg-NOAA/reform_convert_thickness
    11a19b0 MOM6: Option for boundary extrapolation in main remapping
    027c518 fix topo mismatch from current prod runs. Added IAF runoff
    81b6765 Fix for environment change at GFDL
    e96509c Merge branch 'OM4-maintenance' into dev/gfdl
    12f7ee2 More instances where ordering of axes limits should change
    852cc39 Fixed bug in yzcompare
    bc70366 Changed ppfreq to monthly for MLD analysis
    10357d5 Added 'ppfreq' key to manifest.json
    800d000 Fixed issue with multiple files
    25a99a2 Fixes poleward heat trans analysis
    62473ce Updated cmocean module import
    c5d4c49 Add a Baltic_OM4_025 for development purposes
    8c03e4e Uncomment out lines in the make_from_OM4_05 script
    540c554 Adds Baltic OM4_05 test case
    1f82805 MOM6: Merge pull request #674 from Hallberg-NOAA/reform_convert_thickness
    c6eb8be Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl
    0fb4dc3 Merge branch 'reform_convert_thickness' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-reform_convert_thickness
    650daf8 Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl
    149825e Merge branch 'dev/gfdl' into reform_convert_thickness
    2011774 Merge branch 'dev/gfdl' into reform_convert_thickness
    b793b3f MOM6: *Refactored convert_thickness
    104627e (*)MOM6: Merge pull request #666 from Hallberg-NOAA/restructure_step_MOM
    55838d6 mkmf: Fixes for symbolically linked files
    16b4b4f Merge branch 'dev/master' into dev/gfdl
    c1cb38c MOM6: Bringing up to date for purpose of dev/master PR
    12ff1c5 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl
    bbe3c65 Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_step_MOM
    edb0529 FMS: Updated to warsaw_201710
    9452ed2 Added ocean_only/tides_025 test case
    2bc46af MOM6: Changes related to restructuring MOM.F90
    539a74d MOM6: Converted outside land masker to use tiles.
    96b99d3 Merge branch 'OM4-maintenance' into dev/gfdl
    36ee8e5 Merge pull request #191 from jkrasting/cmip6_analysis_updates
    17d0228 Merge branch 'Hallberg-NOAA-tide_support' into dev/gfdl
    d6edb4d Transport analysis to work with monthly pp
    8c037c5 Merge branch 'tide_support' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-tide_support
    6b18621 Merge branch 'OM4-maintenance' into dev/gfdl
    ac58394 MOM6: Made 4 commits to support barotropic tides
    22eb9a9 MOM6: +Made 4 commits to support barotropic tides
    20b0aeb +Added mean density and heat capacity diagnostics
    1f1d57c +Geometric progression for ENERGYSAVEDAYS
    fad8ff2 MOM6: +Corrected available_diags file frazil entries
    051a0ad Merge pull request #181 from jkrasting/user/jpk/webapp_updates_20171010
    f0c6afc Merge pull request #188 from jkrasting/refinediag_fix_20171103
    96a8e5f Fixed typo in refineDiag_ocean_month_rho2.py
    6a2f1fb Merge pull request #187 from jkrasting/refinediag_fix_20171103
    5a724dc More robust refineDiag scripts
    49795eb MOM6: Two PRs for MOM6 to resolve diagnostics issues
    e57d90d OM4: Turned off empty diagnostics in OM4_025
    21b3db3 Removed LT_Enhancement from diag_table
    60a055c MOM6: Removed masking of areas in ocean_static.nc
    c95392e Use only 2 cores for multi-core Travis-CI tests
    660b42c MOM6: Merge branch 'NCAR-dev/ncar' into dev/master
    d9dd61d MOM6: Merge branch 'MJHarrison-GFDL-HVisc_masking' into dev/gfdl
    5d867c1 MOM6: Merge branch 'MJHarrison-GFDL-SfcRestoringMask' into dev/gfdl
    78fadfa Updated cmocean module import
    
  • om4/v1.0.4
    om4/v1.0.4
    
    Fixes for dora, analysis and post-processing
    
    - 12f7ee2 More instances where ordering of axes limits should change
    - 852cc39 Fixed bug in yzcompare
    - bc70366 Changed ppfreq to monthly for MLD analysis
    - 10357d5 Added 'ppfreq' key to manifest.json
    - 800d000 Fixed issue with multiple files
    - 25a99a2 Fixes poleward heat trans analysis
    - 62473ce Updated cmocean module import
  • om4/v1.0.3
    om4/v1.0.3
    
    - 36ee8e5 Merge pull request #191 from jkrasting/cmip6_analysis_updates
    - d6edb4d Transport analysis to work with monthly pp
  • om4/v1.0.2
    om4/v1.0.2
    
    f0c6afc Merge pull request #188 from jkrasting/refinediag_fix_20171103
    96a8e5f Fixed typo in refineDiag_ocean_month_rho2.py
  • om4/v1.0.1
    om4/v1.0.1
    
    - Fixes for fails in the refine-diag step of post-processing
    
    6a2f1fb Merge pull request #187 from jkrasting/refinediag_fix_20171103
  • om4/v1.0
    om4/v1.0
    
    This tags the final version of OM4 0.25-degree configuration.
    
    This tag is the first tag on branch OM4-maintenance which
    diverges from dev/gfdl at tag dev/gfdl/2017.10.19.
    
    Changes since dev/gfdl/2017.10.19:
    
    49795eb MOM6: Two PRs for MOM6 to resolve diagnostics issues
    e57d90d OM4: Turned off empty diagnostics in OM4_025
    21b3db3 Removed LT_Enhancement from diag_table
    60a055c MOM6: Removed masking of areas in ocean_static.nc
  • dev/gfdl/2017.10.19
    dev/gfdl/2017.10.19
    
    - Fixes for CMIP workflow and post-processing.
    - New feature in icebergs (6f87aeb) to help with apparent mass loss due to stuck icebergs.
    
    6f87aeb icebergs: Merge pull request #57 from adcroft/berg_diffusion
    d779aed Merge pull request #183 from nikizadehgfdl/user/nikizadehgfdl/reset_exec_bit_python_scripts
    5e8de3e Merge pull request #185 from jkrasting/ocean_static_script
    c36036e Added append_basin_mask.py script
    01f14a3 Reset exec permissions of python scripts
    96138c6 Merge pull request #182 from ashao/reorder_straits
    4cbea5b Reorder indices of straits according to CMIP6/OMIP
  • dev/gfdl/2017.10.05
    dev/gfdl/2017.10.05
    
    - Changes resulting from QC'ing postprocessed data for CMIP6.
    - No configuration/code changes from dev/gfdl/2017.09.27, just
      diag_table and script changes.
    
    f15b916 Merge pull request #163 from jkrasting/basin_refinediag
    bcd2b90 Tidy-up odds and ends after QC
    9647743 Added 'coordinates' attribute to basin/strait vars.
    1ebf336 Removed call to calc_varaince.py
    9d4536a Updated cell_methods attrs. for refined diags
    b1c65de Updated umo in diag_table
    8fad2c9 Miscellaneous clean-ups from testing
    29c2b13 Flexible mask tiling based on time dimension
    e8bd7e2 Merge remote branch 'origin/post_9_27_updates' into basin_refinediag
    ab64e2a Various fixes for mfo (straits) diagnostic
    f4c5c95 Added thkcello/volcello for rho2 output
    839b026 Merge remote branch 'origin/post_9_27_updates' into basin_refinediag
    c7c3375 Updated diag table for transport diags
    69f35ec Updated calc_variance.py
    6ff7aac Modified interface to calc_w_from_convergence()
    b235c77 Masked Indo-Pacific heat transport below 34S
    350462b Updated coordinates in rho2 refineDiag script
    2ab368b Merge pull request #6 from ashao/add_mfo_diagnostic
    5d039f6 Adds a script to calculate transport in straits
    7f0ab79 Added hfbasin diagnostic to refineDiag script
    769eb6b refineDiag script uses basin_codes.nc file
    b6a25d3 Merge pull request #5 from NOAA-GFDL/dev/gfdl
    b979772 Merge pull request #4 from ashao/add_wmo_to_refine_diag
    a38e983 w had the wrong sign because divergence was calculated, not convergence
    da8591d Include wmo as part of refine diags
    52d52e3 Consolidated refineDiag updates
    7173edb MOC reported on interfaces, not levels
    47cb72e Initial commit of CMIP6 offline diag script
    0814494 Merge pull request #3 from NOAA-GFDL/dev/master