Tags

dev/master/2015.12.17

- cb6db21 needed for OM4_025 stability with MEKE.
- New features for SLight coordinate.

cb6db21 OM4_025: Changed KHTH_MAX_CFL to stabilize model with KHTH>0
e6ce2a2 Updated missing MOM_parameter_doc.all
0408d02 MOM6: +Set thickness diffusivity max CFL at run-time
1c42712 MOM6: *Adjust effective depth of forcing for strong mass loss
228aa4b Added missed MOM_parameter_doc.all
bcdb0c2 MOM6: +Added maximum layer thicknesses
fc10e08 MOM6: *Corrected limited fraction of forcing when losing mass
0490e6a MOM6: Added run-time parameters for bounding surface forcing
3eb7007 Updated MOM_parameter_doc for land_ice_ocean example
6045de1 Added SLight MOM_override file for OM4_025
13344ce +Made global_ALE/hycom use maximum interface depths
290f838 Analysis: Fixing MLD monthly analysis
c08ab93 Merge branch 'dev/master' of github.com:CommerceGov/NOAA-GFDL-MOM6-examples into dev/master
b8c265c Added halocline corrections to global_ALE/SLight
5ad40ae MOM6: +Improve resolution in haloclines and light water
a534fef Added preprocessing scripts for OM4_05
432a900 OM4_033: Added md5sums.txt
2195e01 New sample data for more thorough testing.
58f6586 Merge branch 'dev/master' of github.com:CommerceGov/NOAA-GFDL-MOM6-examples into dev/master
6353528 Updated diagnostics using longer time series example.
846dc30 Added preprocessing scripts for OM4_033
f583750 Merge branch 'angus-g-tracer-vardec' into dev/master
d5d76ef Merge branch 'user/mjh/land_ice_ocean_LM3_SIS2' into dev/master

dev/master/2015.11.30

- Optimization of remapping code (ALE) changed roundoff (e6537af).
- New coordinate options.

- ff9662a MOM6: Added CMOR diagnostic "vo" back to _z output
- 202a313 Correct Barents opening: vm,vmo --> um,umo
- 171c3ed iPython sections mass transport time series
- b49187d Fixes for OM_360x320_C180
- 5a1445e Redirected links to .datasets in OM_360x320_C180
- c6eefe6 Delete README
- f4aa66e Delete README~
- 75ac608 Delete LM3.0_MOM6z_C180_pi_spinup_SP1.xml
- 2ef4192 Delete LM3.0_FLOR2_C180_pi_spinup_SP1
- 471ec0e Update diag_table
- 1520655 New land_ocean_seaice experiment.
- 55d03fb Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master
- 4796a6c New CMOR diagnostic for neutral diffusivity.
- 5fca06e New CMOR diag diftrelo and Khtr_h
- 9c65565 MOM6: *Changed build_grid_SLight to use min_thickness
- 9bf2ecc OM4_025: Increased max_files in diag_manager_nml
- 429656c OM4_025: Fixed mismatched filenames in diag_table
- 59be3db Using FNC1 to specificy dz in OM4_025
- 8ee03b0 Commented out unregistered diagnostics
- 488930a New Sections; reduce month file size; increase ann
- 0cc63ce Added the ocean_only/global_ALE/SLight test case
- 2f3f29e Updated atmos_null submodule
- 6de925f LM3: Updates to work with gnu/pgi and new land-ice-ocean model
- e6537af *MOM6: Refactored evaluation of polynomials in remapping
- 3bad3a8 Merge pull request #64 from NOAA-GFDL/user/jpk/web_analysis_refactor
- 164ffc7 Added line to call main() function
- 3fefa94 Refactoring of analysis scripts for web use
- 7ded54b New grid diags; static diagns in available.diagn
- c95027e MOM6: Added SLIGHT regridding string and coordinate mode
- 929ab54 Testing grid time-filer in global_ALE/hycom
- 9f9a1d4 Updates to tracer budget diagnostics

dev/master/2015.11.12

Minor revs

- 8f374e1 Analysis: Updated MOC script to work on z-output file
- 5ea8e3f Diagn fix for remap tendency: missing dimensions
- 057ca9f MOM6: Merge branch 'bmater-ray_tracing' into dev/master

dev/master/2015.11.09

- Bugfix in MEKE advection
- Added various tweaks for hybrid coordinates
- New diagnostics
- Fixes for analysis

b6ac91c MOM6: Uninitialized variable in MEKE advection
c402677 Added REGRID_COMPRESSIBILITY_FRACTION hybrid coordinates
e891afd MOM6: Added time-filter for regridding
da126e5 Added some more folders to .gitignore
40dbba1 Merge pull request #63 from NOAA-GFDL/user/jpk/xyave_diagtable_entries
a67586f Added xyave diagnostic diag_table entries
d65ce31 Merge pull request #59 from NOAA-GFDL/user/jpk/sea-ice-analysis-fix
221defe Merge pull request #61 from NOAA-GFDL/nikizadehgfdl-patch-2
0f930f8 Merge pull request #62 from NOAA-GFDL/nikizadehgfdl-patch-3
9f0d57e Added Kd_interface to OM4_025 diag_table
dd460f1 MOM6: Merge branch 'user/jpk/z-layer_average_diags' into dev/master
9e5cdc8 Diagn tracer tendencies from vert remapping
f430696 Update EddyKineticEnergy.py
72431a8 Update MOM6_refineDiag.csh
b7cc806 Added if-test for multiple area variable names
645dd19 Diagn (umo_2d,vmo_2d) = vertical sum (umo,vmo)
415e962 Added diagnostics (x,y) advective heat transport
6c079d3 New diagn for mass transports
8992627 Diagnostics: net T/S tendency & lateral advection
4baf7be Diagnostics: net T/S tendency & lateral advection
1435805 MOM6: Corrected documentation for MIXEDLAYER_RESTRAT
1f36497 Updated coupled components to ulm_201510
6dd2356 Tendency diagn for ALE version of diabatic diffuse
9397c14 Fix for Hosoda analysis in post-processing

dev/master/2015.10.23

- Candidate code for hybrid coordinates for testing in OM4_025
- Includes answer changes from various fixes.

305c112 Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master
fb2966a Added hybrid coordinate files for testing in OM4_025
7c5211b Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master
d249dba Diagnostics added for OMIP Table 2.10.
0c9141c FMS: Updated to new ulm branch
c45ab07 MOM6: Fix bathymetry for halo regions next to masked PEs
5f07bfd Analysis: Fixed MOC plot to use vmo if vh is missing
cdf36f5 *MOM6: Avoid division by zero in energetic_PBL() for zero shear
31168bd MOM6: *Added halo update for T & S with DIABATIC_FIRST
ca9d767 *Properly inflate to "min_thickness" in adjust_interface_motion()
a4e7fa9 Corrected available diags for GOLD_SIS
39dabf0 New diagnostics for neutral diffusion tendency.
ace8a99 New diagnostics for neutral diffusion tendencies.
cb5d0e8 Added draft of global_ALE/hycom example
cc1d0f4 *Reconfigured global_ALE examples to look like OM4_025

dev/master/2015.10.13

- Turned off debugging/safety checks in neutral diffusion and ALE.
- Restored old z-diagnostics in OM4 diag_table

22bad0b MOM6: Turned off "safety checks" in ALE code
93bcf69 Switched global_ALE to use Levitus analysis grid
a73ae8d MOM6: Correct error calculation in remapping
074702d MOM6: Made remapping after initialization optional
69d41d9 SIS2: Merge branch 'user/mjh/SIS2_nudging' into dev/master
332a46e MOM6: Refactored remapping in initialization-from-z
5ad85b0 Revert "MOM6: Allow init-from-z to use vanished layers below data"
0ad195a Revert "*MOM6: Changed default Z_INIT_OLD_ALGORITHM to False"
4015c03 Doxygen comments to MOM_forcing.F90.
7c5f815 *MOM6: Changed default Z_INIT_OLD_ALGORITHM to False
6dd2d89 MOM6: Allow init-from-z to use vanished layers below data
4106183 MOM6: Doxygenized MOM_remapping.F90
7dffaef Temporarily restored old z-diagnostics in OM4_025
2341bbe Converted analysis_vgrid_lev35.v1.nc to netCDF3

dev/master/2015.10.02

- New diag_table!
- Compilation issues fixed by ac30159

482b4df *Turned on diurnal shortwave in OM4_025
b5fcb16 Set ADD_DIURNAL_SW to true in ice_ocean_SIS2 tests
6cccd26 SIS2: *Change default value of INTERSPERSED_ICE_THERMO
832ff6a Explicitly set INTERSPERSED_ICE_THERMO in AM2_SIS2B_MOM6i_1deg
7efb836 Explicitly set INTERSPERSED_ICE_THERMO in all cases
221f0b4 Updated diag tables for CMIP6 and extra.
3bee120 Diagn for nonpenSW; corrected SW heating diag.
b7715e3 Updated/corrected diagnostic info for ave_wfo.
e8ff40e Eliminated use of depricated parameters N[IJ]PROC_IO
1688f28 Set CP_BRINE = CP_SEAWATER in SIS2_bergs_cgrid
cae05ed Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master
aedac0f Added diagnostic for penetrative SW heating.
dae46b1 MOM6: Add CMOR name "thetao" to temp.
134a641 SIS2: Eliminated ice_bergs.F90 from SIS2 directory
366d341 MOM6: Added dz generator for use in ALE z*
ee42771 Add CMOR name "thetao" to temp diagnostic.
ac03159 Removed local copies of nctools from OM4 preprocessing
fb57d4e Updated CMOR attributes for time series diags.
714a1f1 Updated CMOR attributes for time series diags.

dev/master/2015.09.28

- Added alternative runoff
- Added stress flux adjustment option
- Fixes for neutral diffusion
- SIS2 ice heat capacity

6964306 Added link to new runoff file for OM4_025
62d1b30 MOM6: Added option to read flux adjustments via data_table
a4c143e *Turned on ePBL in global_ALE/z example
0cd98c5 MOM6: remapping_main() now cycles through tracer registry
ef7d7fa Corrected path in preprocessing to analysis grid
b80d6e7 Merge branch 'user/aja/null_modules' into dev/master
e787678 Merge branch 'user/aja/preproc_jenkins' into dev/master
7859155 Added preprocessing of runoff for OM4
584bd78 Removed vprec from CM4 diag_table
4f1ad01 SIS2: *Relinearized ice heat capacity above freezing
783d109 MOM6: Merge remote-tracking branch 'aja/user/aja/neutral_diffusion' into dev/master
c9e8ffc SIS2: *Mathematically equivalent change to sea-ice heat calc.
6b7f776 Cleanup .gitignore in OM4 preprocessing

dev/master/2015.09.21b

Minor patches to tag dev/master/2015.09.21:

0f1031a Fixed path in CM2G63L frepp script
bd8a0be Merge pull request #51 from NOAA-GFDL/nikizadehgfdl-patch-1
8185c1a Update ocn_annual.frepp

dev/master/2015.09.21

606f31e *Reverted "low mixing" changes in OM4
3e870ad Removed KPP diagnostics from OM4 diag_table
a938ddd MOM6: Added apply_topography_edits_from_file()
fa2dcd9 *New OM4 vertical grid
e6bdc71 Updates for CMOR diagnostic names; more needed.
3ab12cd FMS: Updated FMS to allow for 4d restarts using visible branch.
7abab01 FMS: Updated FMS to allow for 4d restarts.
6df2291 Move umo,vmo from diag_to_Z to dynamics_split_RK2
edfc2ce Move umo,vmo from diag_to_Z to dynamics_split_RK2
66a5f36 Placeholder diag table for building CMIP6 diags.
307ce4a Merge pull request #49 from NOAA-GFDL/user/jpk/diagnostic_and_analysis_edits
1e1b32b Merge branch 'user/smg/remove_KPP_BEFORE_KAPPA_SHEAR' into dev/master
8b3eb68 *Changed default for KPP_BEFORE_KAPPA_SHEAR
4fe33ff SIS2: Minor fix for generate_test_icebergs, used in debugging
5a75341 Layer ave T&S to diagtable; sea ice analysis mod
7332c1b Removed obsolete KPP_BEFORE_KAPPA_SHEAR
b0ddfa0 **Remove obsolete KPP_BEFORE_KAPPA_SHEAR
75dc4c4 Diagnostic KH_t = CMOR diftrblo added.
646b04f Diagnostic updates for Kd_heat, Kd_salt, mldsq
a86f3d2 Corrected units on squared MLD diagnostic: m-->m2
8d1dcdf Fixed paths to MIDAS in ocn_annual.frepp
dc55b38 Added netcdf file of isolated topography edits
6838432 Record version of MIDAS in Makefile
26b950f Moved OM4 grid generation to ice_ocean_SIS2/OM4_025/
2b529ce Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master
968c398 Change CMOR name "rlds" to "rlntds" as per CMIP6.
ae837e0 Change CMOR name "rlds" to "rlntds" as per CMIP6.
2c6167f Updated available_diag after commit 744756ac
744756a MOM6: +Created MOM_diabatic_aux.F90

dev/master/2015.08.17

811a3e4 Fixed typo in MOM6_refineDiag.csh
b4dc3e2 Fixed path to vgrid_75_2m.nc in preprocessing
5f3646c Added surface-to-bottom mean temperature plot
28b9eb4 Merge branch 'user/jpk/global_flux_diags' into dev/master
4035ad9 Updated MOM6 and SIS2 to latest on dev/master
8a6dfad Additional global average flux diagnostics

dev/master/2015.08.06b

(minor correction to dev/master/2015.08.06 for mask_tables)
587221a Added missing mask_tables to OM4_025
6aeff36 Changed DATE_STAMPED_STDOUT settings in 14 cases

dev/master/2015.08.06

91313eb MOM6: Merge branch 'user/aja/backscatter_rossby_num_scaling'
7cd76be MOM6: *Account for negative TKE in energetic_PBL.
e2d52e2 Reduced  MSTAR in OM4_025
a013c55 MOM6: +Added DATE_STAMPED_STDOUT run-time parameter.
9850e18 Switched to ePBL from KPP in OM4_025
ddbe395 Reduced background diffusion in OM4_025
30babd6 Increased MLE re-stratification in OM4_025
9f9269c Use less lateral viscosity in OM4_025
d54aa9c (*) Removed ice_ocean_SIS/OM4_025
1c27030 MOM6: Merge branch 'angus-g-land-check' into dev/master
fa8ccd2 Clean up field_table for ice-ocean experiments
5b67ef9 Merge branch 'nicjhan-62-remap-diag-tests' into dev/master
a0c6fda Merge branch '62-remap-diag-tests' of https://github.com/nicjhan/MOM6-examples into nicjhan-62-remap-diag-tests
103c048 MOM6: Merged multiple pull requests :circus_tent:
7c48f32 Enable option for diag regridding to Z. #62
7fceaa5 Parameter documentation for new Z remapping option. #62