dev/gfdl/2018.03.06 0a806d4 OM4: Added links for WOA2013 initial conditions 291c122 Merge branch 'jkrasting-update_OM4_05_datasets' into dev/gfdl 05c5a9b MOM6: Merge pull request #730 from adcroft/fix-z-init-many-layers 8422d3e OM4_05: Updated generated parameter docs b77ea8e Merge branch 'update_OM4_05_datasets' of https://github.com/jkrasting/MOM6-examples into jkrasting-update_OM4_05_datasets 1a7cd2f Added missing .gitignore files 153f554 MOM6: Merge branch 'ESMG-dev/esmg' into dev/gfdl e62d3f3 Merge branch 'dev-master-candidate-2018-02-28' into dev/master 2afd337 Updated runoff filename in OM4_05 data_table 1040824 Added symlink to static file 3ad53b4 Merge branch 'jkrasting-OM4_05_for_ESM4_dev' into dev/gfdl e60fec2 MOM6: Merge pull request #723 from adcroft/fix-geometric-savedays 954b690 (*)OM4_05: Replaced file-based background viscosity with function 0779f3b *OM4_05: Tidied up MOM_input 5bcd58b Updated grid_spec files for OM4_05 c133ce2 Edit input filenames in MOM_input and MOM_restore b277e81 Updated links to OM4_05 config INPUT files 9b10d87 Merge branch 'OM4_05_for_ESM4_dev' of https://github.com/jkrasting/MOM6-examples into jkrasting-OM4_05_for_ESM4_dev 6a9de59 Update parameters for OM4_05 configuration 37a36cf MOM6: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/add_param_to_avoid_checksum_compare' into dev/gfdl 76ed67e MOM6: Merge branch 'ashao-remapped_tendency_diagnostics' into dev/gfdl d0d0288 MOM6: Merge branch 'angus-g-flux-const' into dev/gfdl 5363923 SIS2: Merge branch 'wfcooke-user/wfc/iceberg_restart_timestamp' into dev/gfdl 05e27fe MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl dbe9f18 MOM6: +Restructured step_MOM(2) 172ce80 OM4_05 preproc: fixes meta-data cdb4936 OM4_05 preproc: cleaned up Makefile fed549a MOM6: Merge branch 'ESMG-fixdome' into dev/gfdl 6087290 Merge pull request #210 from MJHarrison-GFDL/user/mjh/OM4_05_preprocessing 6056316 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl f27f972 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl ae734ca Added missed MOM_parameter_doc.all 7ec313f Fix lingering issues with COREv2 input datasets 3634224 MOM6: Removed trailing blanks from two lines 599e8f4 MOM6: +Restructured step_MOM ca3659b Merge branch 'dev/gfdl' into restructure_step_MOM b6ec3b7 Merge branch 'dev/gfdl' into restructure_step_MOM 24922b0 Includes SGS topograpy variance in ocean_topog.nc - this was inadvertantly removed in a previous commit 1491a53 No longer need to modify time axis info when processing PHC data 83391f6 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 7a465df Updates for the COREv2 protocol experiments - Jenkins is copying PHC salinity restoring data from /archive/gold/datasets file which has header adjustments needed by FMS. - new answers for salt_restore.nc 0119c49 OM4_05: Replaceed user paths with centralized source for data 73447e4 Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl 5428b4e Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing c4909da fix bad path for PHC data and dependency for tidal_amplitude.nc 2dff48e Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl c9fd7cb MOM6: Merge branch 'Hallberg-NOAA-correct_diabatic_clock' into dev/gfdl f905634 Merge branch 'correct_diabatic_clock' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-correct_diabatic_clock e18bedd icebergs: Merge pull request #58 from wfcooke/user/wfc/iceberg_restart_timestamp b0b5547 Merge branch 'dev-master-candidate-2018-02-06' into dev/master b8e6d95 MOM6: Merge branch 'dev-master-candidate-2018-02-06' into dev/master 6bfe277 MOM6: *Corrected the clock as seen by diabatic processes 0a8a1f8 Corrected ENERGYSAVEDAYS in DOME/MOM_input 22952c8 Added static_input.nml for Baltic_OM4_025 dbbbb12 remove JRA salt restoring file from checksums 9bb7fca Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6-examples into user/mjh/OM4_05_preprocessing 0b355f8 new answers for salt_restore b115dad Switch to COREv2 PHC file for salt restoring. 6c37e76 New answers for OM4_05 preprocessing 085f03c Fix previous commit gave the wrong topography. - The topo_edits file was derived by differencing a previously constructed bathy file with the first guess. a7b2723 MOM6: Merge pull request #707 from adcroft/fix-nan-in-radiation-obc 87da7fb icebergs: Merge branch 'nikizadehgfdl-user/nikizadehgfdl/fix_ensemble_restart_filenames' into dev/gfdl 50e93ea Corrected names of OM4_05 pp files to reflect resolution c8c4aba Added missing .datasets link in Baltic_OM4_025 d32dab3 Merge branch 'ashao-add_OM4_025' into dev/gfdl 4afb0a3 Baltic_OM4_025: Cleaned up paths and symbolic links 7b526b0 Baltic_OM4_05: Corrected some symbolic links 7f29a58 OM4_025: Undo changes from bad commit 8dea726 Merge branch 'add_OM4_025' of https://github.com/ashao/MOM6-examples into ashao-add_OM4_025 ba33c6f Merge branch 'MJHarrison-GFDL-user/mjh/OM4_05_preprocessing' into dev/gfdl a7d8ebb OM4 preproc: Remove unnecessary copies from archive 6a0c009 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 070e872 new answers for mosaic_ocean.1080x768/atmos_mosaic_tile1Xland_mosaic_tile1.cdl c0052ad Merge branch 'ashao-add_Baltic_OM4_05' into dev/gfdl bbffa81 Baltic_OM4_05: Cleaned up paths in symbolic links 09b6904 Merge branch 'add_Baltic_OM4_05' of https://github.com/ashao/MOM6-examples into ashao-add_Baltic_OM4_05 7d7e199 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl d44a5fa Merge branch 'restructure_MOM_CS' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_MOM_CS dd0d3e1 Merge branch 'Hallberg-NOAA-restructure_MOM_CS' into dev/gfdl aa386eb Corrected MOM_parameter_doc f3c30c4 MOM6: +Moved u, v, and h diagnostics & other changes cb9bca3 MOM6: Merge branch 'ashao-collapse_vertmap_ndiff_diags' into dev/gfdl 16df984 Include runoff in checksums file 1b2b5b4 updates for Jenkins and md5sum updates for landxatm mosaic d67e280 MOM6: +Made MOM_control_struct opaque 2d1a063 Merge pull request #203 from jkrasting/user/jpk/section_transport_fix 9a830de Merge pull request #204 from jkrasting/user/jpk/change_scalar_precision 1223fb4 MOM6: Merge branch 'travissluka-bug-netfw-zero' into dev/gfdl addcc92 *MOM6: Merge branch 'ashao-ndiff_filter_unstable_stratified' into dev/gfdl 8bff5ee MOM6: Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6 into dev/gfdl 8a400d0 Fill SSS restore field land values with 0 and get rid of soft links aac8b54 MOM6: Merge branch 'wfcooke-user/wfc/grid_initialization' into dev/gfdl 5adac64 Merge branch 'dev/gfdl', remote branch 'origin' into user/mjh/OM4_05_preprocessing 421795d Regridding of JRA55-do-suppl data to OM4_05 grid a091b5c Updates to OM4_05 preprocessing 29ecd96 Merge branch 'user/mjh/OM4_05_preprocessing' of https://github.com/MJHarrison-GFDL/MOM6-examples into dev/gfdl 4f792a2 MOM6: +Merged in PR with documentation corrections e37d28c Changed precision for ocean_scalar* output 67b88a0 Corrected diag_table for salt restoring diagnostic ad0dbd7 Add pp/ts/daily/5yr option for section trans. plots f819a2e Merge branch 'underflow_external_gwave' of https://github.com/Hallberg-NOAA/MOM6-examples into dev/gfdl da2c832 MOM6: +Merged in ESMG-dumbbell f43150e *Set VEL_UNDERFLOW in external_gwave 55c4028 MOM6: Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl 0e557d4 MOM6: Merge pull request #680 from Hallberg-NOAA/restructure_step_MOM da9141a MOM6: Merge pull request #679 from Hallberg-NOAA/reform_convert_thickness 11a19b0 MOM6: Option for boundary extrapolation in main remapping 027c518 fix topo mismatch from current prod runs. Added IAF runoff 81b6765 Fix for environment change at GFDL e96509c Merge branch 'OM4-maintenance' into dev/gfdl 12f7ee2 More instances where ordering of axes limits should change 852cc39 Fixed bug in yzcompare bc70366 Changed ppfreq to monthly for MLD analysis 10357d5 Added 'ppfreq' key to manifest.json 800d000 Fixed issue with multiple files 25a99a2 Fixes poleward heat trans analysis 62473ce Updated cmocean module import c5d4c49 Add a Baltic_OM4_025 for development purposes 8c03e4e Uncomment out lines in the make_from_OM4_05 script 540c554 Adds Baltic OM4_05 test case 1f82805 MOM6: Merge pull request #674 from Hallberg-NOAA/reform_convert_thickness c6eb8be Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 0fb4dc3 Merge branch 'reform_convert_thickness' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-reform_convert_thickness 650daf8 Merge branch 'Hallberg-NOAA-reform_convert_thickness' into dev/gfdl 149825e Merge branch 'dev/gfdl' into reform_convert_thickness 2011774 Merge branch 'dev/gfdl' into reform_convert_thickness b793b3f MOM6: *Refactored convert_thickness 104627e (*)MOM6: Merge pull request #666 from Hallberg-NOAA/restructure_step_MOM 55838d6 mkmf: Fixes for symbolically linked files 16b4b4f Merge branch 'dev/master' into dev/gfdl c1cb38c MOM6: Bringing up to date for purpose of dev/master PR 12ff1c5 Merge branch 'Hallberg-NOAA-restructure_step_MOM' into dev/gfdl bbe3c65 Merge branch 'restructure_step_MOM' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-restructure_step_MOM edb0529 FMS: Updated to warsaw_201710 9452ed2 Added ocean_only/tides_025 test case 2bc46af MOM6: Changes related to restructuring MOM.F90 539a74d MOM6: Converted outside land masker to use tiles. 96b99d3 Merge branch 'OM4-maintenance' into dev/gfdl 36ee8e5 Merge pull request #191 from jkrasting/cmip6_analysis_updates 17d0228 Merge branch 'Hallberg-NOAA-tide_support' into dev/gfdl d6edb4d Transport analysis to work with monthly pp 8c037c5 Merge branch 'tide_support' of https://github.com/Hallberg-NOAA/MOM6-examples into Hallberg-NOAA-tide_support 6b18621 Merge branch 'OM4-maintenance' into dev/gfdl ac58394 MOM6: Made 4 commits to support barotropic tides 22eb9a9 MOM6: +Made 4 commits to support barotropic tides 20b0aeb +Added mean density and heat capacity diagnostics 1f1d57c +Geometric progression for ENERGYSAVEDAYS fad8ff2 MOM6: +Corrected available_diags file frazil entries 051a0ad Merge pull request #181 from jkrasting/user/jpk/webapp_updates_20171010 f0c6afc Merge pull request #188 from jkrasting/refinediag_fix_20171103 96a8e5f Fixed typo in refineDiag_ocean_month_rho2.py 6a2f1fb Merge pull request #187 from jkrasting/refinediag_fix_20171103 5a724dc More robust refineDiag scripts 49795eb MOM6: Two PRs for MOM6 to resolve diagnostics issues e57d90d OM4: Turned off empty diagnostics in OM4_025 21b3db3 Removed LT_Enhancement from diag_table 60a055c MOM6: Removed masking of areas in ocean_static.nc c95392e Use only 2 cores for multi-core Travis-CI tests 660b42c MOM6: Merge branch 'NCAR-dev/ncar' into dev/master d9dd61d MOM6: Merge branch 'MJHarrison-GFDL-HVisc_masking' into dev/gfdl 5d867c1 MOM6: Merge branch 'MJHarrison-GFDL-SfcRestoringMask' into dev/gfdl 78fadfa Updated cmocean module import