dev/master/2016.05.13 Major answer changes: - Transition from c1 to c3 (onGaea) - 5a0939c *Updated answers to gaea c3 - Bugfix for double counting of viscosity - 3e4cae4 MOM6: *Answer changes due to bug fixed by B. Reichl - 41faa65 MOM6: *Answer changes due to bug fixed by B. Reichl f9ee9bb MOM6: Updated to head of dev/master 4b7a999 icebergs: Updated to head of dev/master 95e3394 Added missed MOM_parameter_doc d6e3b3b MOM6: +Added parameter to thicken viscous boundary layers d2f1489 Use python/2.7.3_workstation on PAN nodes for analysis bdfa235 MOM6: Added ISOMIP source code d6b945f MOM6: Added run-time options for new remapping algorithms 96bfefd MOM6: Updated to latest commit acfa2cf mkmf: now supports -l option for link flags f4a95c0 MOM6: *Added halo updates with ALE_remap_init_conds ab703cf *MOM6: Reverting 2f529dc8c7ao due to PGI problem 2f529dc *MOM6: Corrected remapping for zero-thickness source grid 156fbf5 MOM6: *Rewrote find_root for set_grid_metrics_mercator f617960 Corrected typo in Windward passage diagn thetao 75c60a9 Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master 49affaf Mods to PEUC section to correspond to literature. 872833f *MKMF: Update intel template with -msse2 8c75f34 Repalced PNG in flow_downslope with jupyter notebook cebb896 Merge pull request #91 from NOAA-GFDL/user/mjh/OM_360x320_C180 5ead4b7 Merge branch 'dev/master' into user/mjh/OM_360x320_C180 d130360 Diagnostics modification for neutral diffusion bbcd9c2 MOM6: Added comment about how G%max_depth is set 5a0939c *Updated answers to gaea c3 0cc12f9 Added submodule src/mkmf 83ddbce SIS2: Updated src/SIS2 ac7fa88 MOM6: Updated src/MOM6 3512a7b Fix version of fre_nctools for OM4_025 preprocessing 1b4acd1 Merge pull request #85 from NOAA-GFDL/user/nnz/calc_variance_5daily_fix db1a4a1 Merge pull request #86 from NOAA-GFDL/user/mjh/gfdl_python_module_fix 6f41566 Fix GFDL python module problem e98f26e include an extra data point in August 6c7a177 Fix script calc_variance.py to use ocean_5daily 17a07e8 Updated MOM_example_docs for mothballed examples 2e655c1 SIS2: *Corrected Celsius to Kelvin conversion ae16691 SIS2: +Set LATENT_HEAT_FUSION at run time a526063 SIS2 & coupler: +Eliminated cell_area and Ice%ice_mask 34ddb30 SIS2: *+G_EARTH and OMEGA are SIS2 runtime parameters 3e4cae4 MOM6: *Answer changes due to bug fixed by B. Reichl 41faa65 MOM6: *Answer changes due to bug fixed by B. Reichl d81aa9a Updating MOM6 code 10ce4d6 SIS2: +Added CHANNEL_CONFIG and related code to SIS2 b43d6e0 Merge branch 'dev/master' of github.com:NOAA-GFDL/MOM6-examples into dev/master 8fa008a Diagnostics for SSS_sq and ndiff tracer transport 0914d9d SIS2: +Ported MOM6 code into SIS_fixed_initialization caa8085 Refactored flow_downslope (DOME2d) initialization 8008b1f Undid SYMMETRIC_MEMORY_ in ice_ocean_SIS2 parameter docs bdb9dd5 Updated MOM_parameter_doc for seamount/rho 7adf792 SIS2: Made GLOBAL_INDEXING a layoutParam & log G_EARTH 7cb786f Merge remote-tracking branch 'refs/remotes/origin/dev/master' into dev/master a93ef3d MOM6: Made GLOBAL_INDEXING a layoutParam. 570b74f SIS2: +Added required GRID_CONFIG parameter to SIS2 51b0d76 Merge pull request #83 from NOAA-GFDL/user/mjh/fix_ts_depth_integrals 72af50b Fix TS_depth_integrals.py to work with CMOR output b14d5c3 MOM6: *Changed default KV_BBL_MIN to KV 792e227 MOM6: +Split MOM_coord_initialization from MOM_fixed_init 9349db3 SIS2: Changed to use MOM6-like code in setting masks 9f6157a MOM6: +Added MOM_initialize_coord f5eea84 MOM6: +Moved WRITE_GEOM into initialize_MOM c547a34 SIS2: +Added NIBLOCK and NJBLOCK 93f2c74 MOM6: +Added GLOBAL_INDEXING run-time parameter 06ec2c9 Added Davis strait and remove Canadian Archipelago f994c3c MOM6: Fixed "rhoinsitu" diagnostic 5523e8e Corrected latitudes in Pacific EUC diagnostic 0a19709 MOM6: +Revised ocean_grid_type to harmonize with SIS2 909ff11 MOM6: Added diagnostics of potential and in-situ density e8c8148 MOM6: *Separated initial profile from coordinate in sea mount test 371e828 Updated seamount example to use "ts_range" coordinate mode c970ffd Merge pull request #80 from NOAA-GFDL/user/jpk/smg_section_flow_plots 4a6bf80 Typo with Taiwan-Luzon Strait 56c7800 Added obs values and color coding f00b5ae Merge pull request #78 from NOAA-GFDL/user/jpk/smg_section_flow_plots 5d96bc3 Updated comment for argparse description 6295d96 Minor update to dora label ce5baf7 Analysis script for plotting section flows 74081e2 MOM6: Changed the default for DEPTH_LIST_MIN_INC fbcfd5b Added rsdo = penetrative SW diagnostic for CMIP6 663a870 Change diagnostic rsdo to rsdoabsorb as per CMIP6 da09ccc Shortened land_.../OM_360x320_C180 to 1 day ecaccd0 Added static_input.nml for land.../OM_360x320_C180 bd75815 MOM6: *Replaced Area*GV%Angstrom*0.1 by Area*h_min dcbeae8 *Updated seamount example to use GFS = 9.8 c1854b6 Merge pull request #76 from NOAA-GFDL/user/jpk/minor_dora_updates e7c5a3e 'centered' vs. 'autocenter' fix to TS_drift.py 3a511b5 Merge branch 'gustavo-marques-seamount_rho' into dev/master a045362 *Added ocean.stats for seamount/rho bdf1fdc Corrected MOM_parameter_doc for seamount/rho 9525f6c Merge branch 'seamount_rho' of https://github.com/gustavo-marques/MOM6-examples into gustavo-marques-seamount_rho f498510 Merge pull request #74 from NOAA-GFDL/user/jpk/dora_analysis_mods 4e7ae2b New coordinate, rho, for the seamount test.